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Structure of PDB 8wa2 Chain F Binding Site BS04

Receptor Information

>8wa2 Chain F (length=1443) Species: 3055 (Chlamydomonas reinhardtii)

VLYALESAVEPFSPIATVAAKWSFRIQRSKATPAGVTESIKCAFFGADTG
TAPADLAAWLTAANGAGGLTATILPSSIPSDIISFTRTYAAAAASLQGKL
QCFIGSTPLWDPYYPTPVFQVLAAAPTYTLSASVTPAVVPVDTATLWTYN
IIRSVPVPAGGPSLPILCSFWDGKTGAAPTTDAGWAALAGSANGKGTSMA
PGSTTATCSFTPSYSTTGTATPTLQLIQNSFALDAATTVGFLSPVYTAPA
FATVTAASYTISSYLNPVTPVAGGAAAVWRIVITRNAAVTASAKTLTCQM
PDNGQGGSPADVTADIAVGGTTTVCVFSIAGYTTATPGPYFATVNVVDGA
VTTSHITKNFTVLASGTTAPTYAVTSVVSPATPVKVSTPVTYTFTITRTT
AVPAGGIPQPIICEFFNGEGTAPASAAAYWRVSTTIPDADTVVAVMAPGE
TTTTCTFTTYYTTVSAGGFTAKLMVFGESATAAPLLTSLSVTPSQLLAAV
HSFATPMVVAAAVVAVESTTISPNYNPTTPYTNIPTYFTFTLLRDPPVPP
SASSGVQFACALYTGQNVNPASAPSAITDAVYKTFTDVTTAVATDANYFA
DQQLRVVTMAPGTGRVSCTFPTLYAAAGPFSPKFFVFEYASSTVGANALA
VADTVTSLTSFTTQAAPTFITGPTNVPQRVPLPKGFRTTCFDGYELIFSN
DNYTNGVRVAVDAYPYPVGQCRKCPGGTATMDGYRCIPCPSGYWSNEGAR
ECTACPAGTIAKPAALTARAKYSIDPTTYHFVTHLAMGPESCKKCPKGYF
QPNIAGTVCLPCPSGFVSTSGATGCTACSEGTYHTDGVGTTTPGEATSLD
TTDTFGSIYPIIPNTCRQCPANTYLPLRGQAAIASMNLAAVSSATPCRPC
EDGTWSKAGAAGCQKCPPGTYRNTWFSGQLGSPFITADGVPVATTLTELG
SGCSQCPPGTYAPTFGMSVCLPCPAGTFASAPGATACQQCKPGTNSLMGD
RTQQMALVVTNAANDFPALRAYTISGMVAGPAYAKPIVTGPDTNFFMAGK
SETCSTNLPGYYTDVDGLPIQLPCKPGTFMPFDTATANLLDTGLTVDGTQ
CYTCQTGTFNDEFSQPVCKACWSGSFASKRGLPTCEIAQPGTFTNVAAAA
NATFNTATLIPTGLVKGAQAPTPCGMGYFQSSAETTTCTACAVGTYADQA
GLAACKPCQPGRYQNSIGQRVCKPCDMGTYSRYGGELCTKCPAGTVASKT
GSSQCTPCAAGFYANAPDSATSCRACPRGYYGPYSGAYADNLGDEFEGPR
GCYKCPYDFFADRPGVRQCTACPPLDLGGGNLVEQCTEDLGSQRCKPCSL
LSKPKTARTEQSPPPPSPSPPPPPPPSPRPPSPNPPSPRPPSPAPPSPNP
PPTSPPPSPPPSPPPPRPPPPPPPPPSPPPPNRSPPPPPPASS

Ligand information

• Ligand ID: FUB
• InChI: InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4+,5-/m0/s1
• InChIKey: HMFHBZSHGGEWLO-KLVWXMOXSA-N
• SMILES:
  CACTVS 3.341: OC[C@@H]1O[C@H](O)[C@H](O)[C@H]1O
  OpenEye OEToolkits 1.5.0: C([C@H]1[C@@H]([C@H]([C@H](O1)O)O)O)O
  OpenEye OEToolkits 1.5.0: C(C1C(C(C(O1)O)O)O)O
  CACTVS 3.341: OC[CH]1O[CH](O)[CH](O)[CH]1O
  ACDLabs 10.04: OC1C(OC(O)C1O)CO
• Formula: C5 H10 O5
• Name: beta-L-arabinofuranose;
  beta-L-arabinose;
  L-arabinose;
  arabinose
• ZINC: ZINC000004097027
• PDB chain: 8wa2 Chain BD Residue 2

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8wa2 Structure-guided discovery of protein and glycan components in native mastigonemes
• Resolution: 3.0 Å
• Binding residue (original residue number in PDB): Y1773 Y1795
• Binding residue (residue number reindexed from 1): Y1281 Y1303
• Annotation score: 4

External links

• PDB: RCSB:8wa2, PDBe:8wa2, PDBj:8wa2
• PDBsum: 8wa2
• PubMed: 38552612
• UniProt: A8J9H7

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