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BioLiP

Structure of PDB 6ha8 Chain V Binding Site BS03

Receptor Information
>6ha8 Chain V (length=541) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KEIVTLTNVSYEVKDQTVFKHVNASVQQGDIIGIIGKNGAGKSTLLHLIH
NDLAPAQGQILRKDIKLALVEQETAAYSFADQTPAEKKLLEKWHVPLRDF
HQLSGGEKLKARLAKGLSEDADLLLLDQPTNHLDEKSLQFLIQQLKHYNG
TVILVSHDRYFLDEAATKIWSLEDQTLIEFKGNYSGYMKFREKKRLTQQR
EYEKQQKMVERIEAQMNGLASWSEKAHAQSTKKEGFKEYHRVKAKRTDAQ
IKSKQKRLEKELEKAKAEPVTPEYTVRFSIDTTHKTGKRFLEVQNVTKAF
GERTLFKNANFTIQHGEKVAIIGPNGSGKTTLLNIILGQETAEGSVWVSP
SANIGYLTQEVFDLPLEQTPEELFENETFKARGHVQNLMRHLGFTAAQWT
EPIKHMSMGERVKIKLMAYILEEKDVLILDQPTNHLDLPSREQLEETLSQ
YSGTLLAVSHDRYFLEKTTNSKLVISNNGIEKQLAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Ligand information
>6ha8 Chain x (length=75) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gccgaggugguggaauugguagacacgcuaccuugaggugguaguuuacg
gguucaagucccguccucgguacca
<<<<<<<..<<<...........>>><<<<<<.......>>>>>>..<<<
<<.......>>>>>>>>>>>>....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ha8 Structural basis for antibiotic resistance mediated by theBacillus subtilisABCF ATPase VmlR.
Resolution3.5 Å
Binding residue
(original residue number in PDB)		K226 R383 H385 N388 L389 H392
Binding residue
(residue number reindexed from 1)		K225 R382 H384 N387 L388 H391
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
GO:0050825 ice binding

View graph for
Molecular Function
External links
PDB RCSB:6ha8, PDBe:6ha8, PDBj:6ha8
PDBsum6ha8
PubMed30126986
UniProtP39115|VMLR_BACSU Ribosome protection protein VmlR (Gene Name=vmlR)

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