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BioLiP

Structure of PDB 2yfc Chain D Binding Site BS03

Receptor Information
>2yfc Chain D (length=130) Species: 243230 (Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PPTNAERLHEFHRAIGAATPERPTPPPPELLRLRQTLLDEESAEVRAEID
HLLARQAAGEALSAGDLAPLAHELADLLYVTYGALDQLGIDADAVFAEVH
RANLSKASGLKPEGWRPADVRGVIERLQHA
Ligand information
Ligand IDMN
InChIInChI=1S/Mn/q+2
InChIKeyWAEMQWOKJMHJLA-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mn+2]
CACTVS 3.341[Mn++]
FormulaMn
NameMANGANESE (II) ION
ChEMBL
DrugBankDB06757
ZINC
PDB chain2yfc Chain D Residue 1146 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2yfc Structural and Functional Insights Into Dr2231 Protein, the Mazg-Like Nucleoside Triphosphate Pyrophosphohydrolase from Deinococcus Radiodurans.
Resolution2.01 Å
Binding residue
(original residue number in PDB)		E46 E47 E50
Binding residue
(residue number reindexed from 1)		E40 E41 E44
Annotation score4
Enzymatic activity
Enzyme Commision number 3.6.1.19: Transferred entry: 3.6.1.9.
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
GO:0047429 nucleoside triphosphate diphosphatase activity

View graph for
Molecular Function
External links

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