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BioLiP

Structure of PDB 1dvb Chain A Binding Site BS03

Receptor Information
>1dvb Chain A (length=191) Species: 882 (Nitratidesulfovibrio vulgaris str. Hildenborough) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MKSLKGSRTEKNILTAFAGESQARNRYNYFGGQAKKDGFVQISDIFAETA
DQEREHAKRLFKFLEGGDLEIVAAFPAGIIADTHANLIASAAGEHHEYTE
MYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKEGRVFLR
EQATKWRCRNCGYVHEGTGAPELCPACAHPKAHFELLGINW
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain1dvb Chain A Residue 194 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1dvb The 1.9 A crystal structure of the "as isolated" rubrerythrin from Desulfovibrio vulgaris: some surprising results.
Resolution1.9 Å
Binding residue
(original residue number in PDB)		E20 E53 H56 E128
Binding residue
(residue number reindexed from 1)		E20 E53 H56 E128
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0005506 iron ion binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
Cellular Component
GO:0005575 cellular_component
GO:0005737 cytoplasm

View graph for
Molecular Function
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Cellular Component
External links
PDB RCSB:1dvb, PDBe:1dvb, PDBj:1dvb
PDBsum1dvb
PubMed10968622
UniProtP24931|RUBY_NITV2 Rubrerythrin (Gene Name=rbr)

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