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Structure of PDB 8j9h Chain S8 Binding Site BS02

Receptor Information

>8j9h Chain S8 (length=182) Species: 3039 (Euglena gracilis)

PHPDVPKDVSGLGMGLAFMNQFLLKEIMKAMWIVTIYTFRQPSVTIHYPY
ERNTKSTRFRGEHALLIYPDGDERCITCQLCEVTCPAQAIAIDGVEDDDG
SRMASRFDLDMHKCIYCGLCQEACPVDAIVETPHAEFCSTEYDSLLYDKA
RLLENGIRWTSAIEYMVAKERSDFPTNSQRFK

Ligand information

• Ligand ID: SF4
• InChI: InChI=1S/4Fe.4S
• InChIKey: LJBDFODJNLIPKO-UHFFFAOYSA-N
• SMILES:
  OpenEye OEToolkits 2.0.7: [S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
  CACTVS 3.385: S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
• Formula: Fe4 S4
• Name: IRON/SULFUR CLUSTER
• PDB chain: 8j9h Chain S8 Residue 298

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8j9h Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism.
• Resolution: 3.11 Å
• Binding residue (original residue number in PDB): C104 I105 T106 C107 Q108 C110 C153
• Binding residue (residue number reindexed from 1): C75 I76 T77 C78 Q79 C81 C124
• Annotation score: 4

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat May 17 20:22:03 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1701     title=pdb2title(pdbid)

   1702     if bs.startswith("BS"):

=> 1703         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

   1704     else:

   1705         if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8j9h', asym_id = 'S8', bs = 'BS02', title = "Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism. "

 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8j9h', asym_id='S8', bs='BS02', title="Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism. ")

   1326         display_ec(ec,csaOrig,csaRenu)

   1327     if go:

=> 1328         display_go(go,uniprot,pdbid,asym_id)

   1329     return pubmed,uniprot

   1330 

global display_go = <function display_go>, go = '0016020,0016651,0051539', uniprot = '', pdbid = '8j9h', asym_id = 'S8'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016020,0016651,0051539', uniprot='', pdbid='8j9h', asym_id='S8')

    484         '''.replace("$namespace_link",namespace_link

    485           ).replace("$namespace",namespace

=>  486           ).replace("$uniprot",u

    487         ))

    488         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>