Structure of PDB 1f8v Chain C Binding Site BS02

Receptor Information
>1f8v Chain C (length=311) Species: 103782 (Pariacoto virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RLTDAGLAFLKCAFAAPDFSVDPGKGIPDNFHGRTLAIKDCNTTSVVFTP
NTDTYIVVAPVPGFAYFRAEVAVGAQPTTFVGVPYPTYATNFGAGSQNGL
PAVNNYSKFRYASMACGLYPTSNMMQFSGSVQVWRVDLNLSEAVNPAVTA
ITPAPGVFANFVDKRINGLRGIRPLAPRDNYSGNFIDGAYTFAFDKSTDF
EWCDFVRSLEFSESNVLGAATAMKLLAPGGGTDTTLTGLGNVNTLVYKIS
TPTGAVNTAILRTWNCIELQPYTDSALFQFSGVSPPFDPLALECYHNLKM
RFPVAVSSREN
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain1f8v Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1f8v The structure of pariacoto virus reveals a dodecahedral cage of duplex RNA.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		D249 E251
Binding residue
(residue number reindexed from 1)		D199 E201
Annotation score4
Enzymatic activity
Enzyme Commision number 3.4.23.44: nodavirus endopeptidase.
Gene Ontology
Molecular Function
GO:0004190 aspartic-type endopeptidase activity
Biological Process
GO:0006508 proteolysis

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Molecular Function
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Biological Process
External links
PDB RCSB:1f8v, PDBe:1f8v, PDBj:1f8v
PDBsum1f8v
PubMed11135676
UniProtQ9J7Z0|CAPSD_PAV Capsid protein alpha (Gene Name=alpha)

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