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BioLiP

Structure of PDB 2owq Chain B Binding Site BS02

Receptor Information
>2owq Chain B (length=224) Species: 696871 (Vaccinia virus Western Reserve) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SGLVPRGSHMNSVTVSHAPYTITYHNDWEPVMSQLVEFYNEVASWLLRDE
TSPIPDKFFIQLKQPLRNKRVCVCGIDPYPKDGTGVPFESPNFTKKSIKE
IASSISRLTGVIDYKGYNLNIIDGVIPWNYYLSCKLGETKSHAIYWDKIS
KLLLQHITKHVSVLYCLGKTDFSNIRAKLESVTTIVGYHPAARDFEKDRS
FEIINVLLELDNKAPINWAQGFIY
Ligand information
Ligand IDGOL
InChIInChI=1S/C3H8O3/c4-1-3(6)2-5/h3-6H,1-2H2
InChIKeyPEDCQBHIVMGVHV-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.0C(C(CO)O)O
ACDLabs 12.01
CACTVS 3.370		OCC(O)CO
FormulaC3 H8 O3
NameGLYCEROL;
GLYCERIN;
PROPANE-1,2,3-TRIOL
ChEMBLCHEMBL692
DrugBankDB09462
ZINCZINC000000895048
PDB chain2owq Chain B Residue 302 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB2owq Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly
Resolution2.4 Å
Binding residue
(original residue number in PDB)		T12 T14 F50 I51
Binding residue
(residue number reindexed from 1)		T21 T23 F59 I60
Annotation score1
Enzymatic activity
Enzyme Commision number 3.2.2.27: uracil-DNA glycosylase.
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0004844 uracil DNA N-glycosylase activity
GO:0016787 hydrolase activity
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds
Biological Process
GO:0006281 DNA repair

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Molecular Function
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Biological Process
External links
PDB RCSB:2owq, PDBe:2owq, PDBj:2owq
PDBsum2owq
PubMed17605817
UniProtP04303|UNG_VACCW Uracil-DNA glycosylase (Gene Name=OPG116)

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