Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP

Structure of PDB 8uu5 Chain T Binding Site BS01

Receptor Information
>8uu5 Chain T (length=101) Species: 1642 (Listeria innocua) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MYAIIETGGKQIKVEAGQEIYVEKLAGEVGDVVTFDKVLFVGGDSAKVGV
PFVDGATVTAKVEKQGRAKKLTVYKYKPKKNYHKKQGHRQPYTKLTIDAI
N
Ligand information
>8uu5 Chain A (length=2902) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uuaaguuagaaagggcgcacgguggaugccuuggcacuaggagccgaaga
aggacgggacuaacaccgauaugcuuuggggagcuguacguaagcguuga
uccagagauuuccgaaugggggaacccacuaucuuuagucggauaguauc
cuuacgugaauacauagcgugaggaaggcagacccagggaacugaaacau
cuaaguaccuggaggaagagaaagaaaaaucgauuuccugaguagcggcg
agcgaaacggaaagagcccaaaccaagaagcuugcuucuugggguuguag
gacacucuauacggaguuacaaaagaaaguuauaaaugaagcggucugga
aaggcccgccaaagacgguaacagcccgguaguugaaauggcuuucccuc
cagaguggauccugaguacgacggaacacgugaaauuccgucggaauccg
ggaggaccaucucccaaggcuaaauacucccuagugaccgauagugaacc
aguaccgugagggaaaggugaaaagcaccccggaaggggagugaaacagu
uccugaaaccgugugccuacaaguaguuagagcccguuaaugggugauag
cgugccuuuuguagaaugaaccggcgaguuacgauuuguugcaagguuaa
gcggaaaaagcggagccguagcgaaagcgagucugaauagggcgcauaag
uaacaggucguagacccgaaaccaggugaucuacccauguccaggaugaa
gguaagguaauacuuacuggagguccgaacccacgcacguugaaaagugc
ggggaugagguguggguagcggagaaauuccaaucgaacuuggagauagc
ugguucucuccgaaauagcuuuagggcuagccucgagguaaagagucaug
gagguagagcacuguuuggacuaggggccgguuaccgaauucagauaaac
uccgaaugccauguacuuauacucgggagucagacugcgagugauaagau
ccguagucgaaagggaaacagcccagaccaccaguuaagguccccaaaua
uauguuaaguggaaaaggaugugggguugcuuagacaaccaggauguugg
cuuagaagcagccaccauugaaagagugcguaauagcucacuggucgagu
gaccccgcgccgaaaauguaccggggcuaaacauauuaccgaaacugugg
augaaccgguucgugguaggagagcguucuaagggcggugaagucagacc
ggaaggacugguggagcgcuuagaagugagaaugccgguaugaguagcga
aagaagggugagaaucccuuccaccgaauaucuaagguuuccugaggaag
gcucguccgcucaggguuagucgggaccuaagccgaggccgauaggcgua
ggcgauggacaacagguagagauuccuguaccagugcuaauuguuuaacc
gauggggugacacagaaggauagggaaucgcacgaauggaaaugugcguc
caagcagugagugugagaaguaggcaaauccgcuucuugcgaagcaugag
cugugauggggaagcggaaguuccugauuucacgcugucaagaaaagccu
cuaggaagaguaguacugcccguaccgcaaaccgacacagguagaugagg
agagaauccuaaggugagcgagagaacucucguuaaggaacucggcaaaa
ugaccccguaacuucgggagaaggggugcucuauuagggugcaagcccga
gagagccgcagugaauaggcccaggcgacuguuuagcaaaaacacagguc
ucugcaaaaccguaaggugacguauaggggcugacgccugcccggugcug
gaagguuaagaggagugcuuagcuucggcgaagguacgaauugaagcccc
aguaaacggcggccguaacuauaacgguccuaagguagcgaaauuccuug
ucggguaaguuccgacccgcacgaaaggcgcaacgaucugggcacugucu
caacgagagacucggugaaauuauaguaccugugaagaugcagguuaccc
gcgacaggacggaaagaccccguggagcuuuacugcaaccugauauggaa
uguuuguaccgcuuguacaggauagguaggagccgaagagacgugugcgc
uagcauacgaggaggcaauggugggauacuacccuggcuguaugaccauu
cuaacccgccacgcuaagcgcguggggagacagugucaggugggcaguuu
gacuggggcggucgccuccuaaagaguaacggaggcgcccaaagguuccc
ucagaauggauggaaaucauucgcagaguguaaaggcacaagggagcuug
acugcgagacugacaagucgagcagggacgaaagucgggcuuagugaucc
ggugguuccgcauggaagggccaucgcucaacggauaaaagcuaccccgg
ggauaacaggcuuaucucccccaagaguccacaucgacggggagguuugg
caccucgaugucggcucgucgcauccuggggcuguagucggucccaaggg
uugggcuguucgcccauuaaagcggcacgcgagcuggguucagaacgucg
ugagacaguucggucccuauccgucgcgggcgcaggaaauuugagaggag
cuguccuuaguacgagaggaccgggauggacacaccgcugguguaccagu
uguuccgccaggagcaucgcuggguagcuauguguggcagggauaaacgc
ugaaagcaucuaagcgugaagccccccucaagaugagauuucccauuucu
ucggaaaguaagaucccugaaagaugaucagguagauagguuuggagugg
aaguguagcgauacauggagcggacaaauacuaaucgaucgaggacuuaa
cc
<<<<<<......<<<<<<<<<<<....{[[..[[<<<<<<<[[<<.....
.<<<<<<.((..((.>>>.....<<<<<<<..<<<))..)).>>>.....
>>>>>>>...>>>....<<<....>>><<<<<<<......>>>>>>>.<<
<<<<<<<.........>>>>>>>>>.>>....<<<<<<.....<<....>
>......>>>>>.>.........<<....>>..<<<<<......<<....
.>>.....>>>>>..(((....<<<<<<<<....>>>>>>>>......<<
<<<<<<<<....<<<<........<<<<<<<<<.<<<.....<<<<....
..>>>>.((......<<<.....))>>>...>>>...>>>>>>>>>.>>>
>>>>>>>..>>>>.....<<<<<<<<.........>>>>>>>>......<
<<<<..<<<<>>>>>..)))......]].>>>>>>>.]]...........
....<<....>>....]].........<<<<....>>>>...........
..}....>>>>>>>>>>>.......<<<<..<<<<......>>>>..>>>
>...<.<........>.>.<<<<<<....<<<<<<<<<<<<<..<<<...
<<.......>>...>>>...<<....>>..<<<<.....>>>>......>
>>>>>>>>>>>>..<<.<..<<<<<<<.....<<<<<<<<<..<<<....
<<<<<<......>>>>>>.....>>>...<<<.<<<<<........>>>>
>>>>....>>>>>>>>>...<<<.....>>>......>>>>>>...>..>
.>>..<<<<<<....<<<<<....>>>>><<<<<<<<.....<<<<<<<<
<.....<<<...<<<<<<<<......<<..>>.......>>>>>>>>..>
>.>.....>>>>>.>>>>...>>>>>>.>>..<<<<<<<.<<......>>
.>>>>>>>....<<<......>>>...<<<<.<<<...<<<(((.....<
<<<<<...........<<..<<<<<<<<<.<......<<<<<.<<...<<
<<.......>>>>...>>.........<<......>>...>>>>>..>.>
>>>>>>>>.>>...........))).....>>>>>>.>>>...>>>>>>>
<<<<<<..>>>>>>....>>>>>><.<<<<<<<.<<......<<<<<.<<
....>>.>>>>>...>>.>>>>>>>..>.....>>>>>><......<<..
..<<<<<<.......>>>>>><<<<....<<<<<.<<...<<<<<<...<
<.....>>.>>>>>>....((<<<<.<<...<<<...<<<....>>>...
>>>...>>...<<<<<........>>>>>))<<<<<<<<.<<......<<
...<<<<<...<<<<..<<<..<<<<<.<<<<<...(((....>>>>>.<
<..<<<<<..<<<<<<<<<<<.<<.....>>>>>>>>>.....>>>>..>
>>>>...>>...........>>>>>...>>>...>>>>........>>>>
>..>>..>>.>>>>>>>>>>>>..>>.....<<......>>>>>>>.<<<
<.....>>>>..>>>>..<<<<....<<<<<<<<.<<.........<...
..<<<<<....<<..>>.....>>>>><<<<<....<<<<....>>>>..
.>>>>>............<<<<<<<<<..<<<.........>>>..<<<<
<<<.....<<<....>>>.......>>>>>>>..<<<<.<<<..<<<<<<
<..<<<<..<<...<<<<<<.<<....>>..>>>>>>...>>..>>>>>>
>>>..>>>>><<<<<<.......>>>>>>........<...........<
<<<<<.....>>>>>>.....>....>>>>...>>.>>>>>>>..>..>>
.>>>>>>>>.>>>>>>.....>.....<<<<<........>>>>>..<<<
<<<<<.(((.[[......<<<<.[[<<<<..<<<<<.<<<<<<<<<.<<<
<<.<<<<<<.<<<...........<<<<<..<<<.......<<<<<<<..
..>>>>>>>....>>>............>>>>>..>>>.>>>>>>.>>>>
>....<<.<<<<<<.....>>>>>>>>.....>>>>>>>>>..>>>>>..
<<<<.....>>>><<<<<<...........>>>>>>..<<...<<<<<<<
...<<<<<<.......>>>>>>.....<<.[.(((>>....>>>>>>>..
.<<<<..<<<<....>>>>..>>>>.<<<....>>>.>>)))]......<
<<<<<<.((..>>>>..))>>>>>>>.............>>>>..]]>>>
>.......<<<<.<.<<<<<<...<<.......>>...>>>>>>...>>>
>.>.......<<<<<.<<<<<<..<<<<<<<<<......>>>>>>..>>>
.<<<<<.....>>>>>.....>>>>>..>...>>>.>>....<<<<<<<.
...>>>.>>>>....]]..)))>>>>>>>>....<<<<<<<...<<<<..
<<<<<<<...............>>>>>>>.<<<<<...<<<<...<<<<<
<<<<<<.)))>>>>>>..>>>>>...>>>>.>>>>>...<<<.<..<<<<
<...........>>>>>...>>>>.>>>>.......>>>>>>>..<<<<.
...>>>>....<<<<<<<<<.......>>>>>....<<<<<<<<..<<..
..<<<<<....>>>>>...>>...>>>>>.>>>...>>>>....>>>>>>
..
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8uu5 Mechanistic insights into the alternative ribosome recycling by HflXr.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		G8 G9 K10 Y21 E23 K24 R67 K70 Y76 K77 P78 K79 K80 Y82 K84 K85 Q86 G87 H88 R89 Q90 Y92
Binding residue
(residue number reindexed from 1)		G8 G9 K10 Y21 E23 K24 R67 K70 Y76 K77 P78 K79 K80 Y82 K84 K85 Q86 G87 H88 R89 Q90 Y92
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links

zhanglabzhanggroup.org | +65-6601-1241 | Computing 1, 13 Computing Drive, Singapore 117417