BioLiP
Structure of PDB 4gkj Chain Q Binding Site BS01
>4gkj Chain A (length=1513)
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uggagaguuugauccuggcucagggugaacgcuggcggcgugccuaagac augcaagucgugcgggccgcgggguuuuacuccguggucagcggcggacg ggugaguaacgcgugggugaccuacccggaagagggggacaacccgggga aacucgggcuaaucccccauguggacccgccccuugggguguguccaaag ggcuuugcccgcuuccggaugggcccgcgucccaucagcuaguugguggg guaauggcccaccaaggcgacgacggguagccggucugagaggauggccg gccacaggggcacugagacacgggccccacuccuacgggaggcagcaguu aggaaucuuccgcaaugggcgcaagccugacggagcgacgccgcuuggag gaagaagcccuucgggguguaaacuccugaacccgggacgaaacccccga cgaggggacugacgguaccgggguaauagcgccggccaacuccgugccag cagccgcgguaauacggagggcgcgagcguuacccggauucacugggcgu aaagggcguguaggcggccuggggcgucccaugugaaagaccacggcuca accgugggggagcgugggauacgcucaggcuagacggugggagagggugg uggaauucccggaguagcggugaaaugcgcagauaccgggaggaacgccg auggcgaaggcagccaccugguccacccgugacgcugaggcgcgaaagcg uggggagcaaaccggauuagauacccggguaguccacgcccuaaacgaug cgcgcuaggucucugggucuccugggggccgaagcuaacgcguuaagcgc gccgccuggggaguacggccgcaaggcugaaacucaaaggaauugacggg ggcccgcacaagcgguggagcaugugguuuaauucgaagcaacgcgaaga accuuaccaggccuugacaugcuagggaacccgggugaaagccuggggug ccccgcgaggggagcccuagcacaggugcugcauggccgucgucagcucg ugccgugagguguuggguuaagucccgcaacgagcgcaacccccgccguu aguugccagcgguucggccgggcacucuaacgggacugcccgcgaaagcg ggaggaaggaggggacgacgucuggucagcauggcccuuacggccugggc gacacacgugcuacaaugcccacuacaaagcgaugccacccggcaacggg gagcuaaucgcaaaaaggugggcccaguucggauuggggucugcaacccg accccaugaagccggaaucgcuaguaaucgcggaucagccaugccgcggu gaauacguucccgggccuuguacacaccgcccgucacgccaugggagcgg gcucuacccgaagucgccgggagccuacgggcaggcgccgaggguagggc ccgugacuggggcgaagucguaacaagguagcuguaccggaaggugcggc uggaucacuuucu
....<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<..<..<<< .<<<..<<<..<<.<<<<<<<<<.......>>>>>>>>>.>>>>>..... .<<.......<<<<<<<<..<<...<<<<<<<.<<<<<....<<<<<... ...>>>>>.....>>>>>...<<<<<.<<<<<....>>>>>.>>>>>..< <<<...>>>>.>>>>>>>..>>>>>>>>>><<<....<<<..<<<<<<<< .......>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>> >>.>>.<<<<<.<.........>>>>>>.<<<<<..>>>>>...>>>>>> >........<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<< ......<<<<....>>>>.....>>>>....<<<<<......<.<<<<.. ...>>>>..>.......>>>>>......<<<<<(((...<<<<<.....< <.)))>>.......>>>>>>>>>>..>>>>>>>>>..........<<<(( .....<<<<...<<<.<<<<<<<.<<<<<<<<<<......<<<<<<.... .>>>>>>....>>>>>>>>..>>>>>>>>>...<<<<<<<<...<<<<<< <....<<<<<<<.<..<<<......>>>.....>.>>>>>>>........ ...<<....>>.>>>>>>>..>>>>>.>>>...>>>...>>>>....<<< <<<...<<...<<<<.........>>>>...>>>>>>>>..........< <<<<<..<<<<<<<<<<...>>>>>>>>>>...<<..))>>.....>>>> >>.>>>.<<<......<<<<....>>>>....>>>..)))).]<<<<<.< <<<<<<.<<.<<<<<<..<<<<<<<<<<......<<........>>.... ......<<<<<<<......<<<..<<...<<.<<<<....>>>>.>>... <<<<....>>>>...>>..>>>.<<<.<<<..<<<<<<.......<<<<< <<<<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<< <<...<...<<<.....>>>.>....>>>>>>>.....<<<<<....>>> >>........>>>>.........>>>...>>>>>>>>>...>>>>>>>.. .>>.>>>>>>>>.....<<<<<<<.....<<<..<<..<<<<....>>>> ..>>....>>>.....>>>>>>>...........<<<<<<<........> >>>>>>..........>>>>>>....<<<<<<<..........>>>>>>> ......>>...>>>>>>>>>>.>>....<..<<.<.<<<<.<<<..<<<< <<<<<<<<<...<.<<<<....<<<....>>>.>>>>.>..>>>>>>>>> >>>>..>>>.>>>>..>.>>...>.....<<<<<<<<<....>>>>>>>> >............
UnboundLocalError Python 3.6.8: /usr/bin/python3 Sun May 18 05:53:20 2025
A problem occurred in a Python script. Here is the sequence of
function calls leading up to the error, in the order they occurred.
/var/www/html/BioLiP/pdb.cgi in <module> ()
1701 title=pdb2title(pdbid)
1702 if bs.startswith("BS"):
=> 1703 pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
1704 else:
1705 if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4gkj', asym_id = 'Q', bs = 'BS01', title = 'Expanded use of sense codons is regulated by modified cytidines in tRNA.'
/var/www/html/BioLiP/pdb.cgi in display_interaction (pdbid='4gkj', asym_id='Q', bs='BS01', title='Expanded use of sense codons is regulated by modified cytidines in tRNA.')
1326 display_ec(ec,csaOrig,csaRenu)
1327 if go:
=> 1328 display_go(go,uniprot,pdbid,asym_id)
1329 return pubmed,uniprot
1330
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '4gkj', asym_id = 'Q'
/var/www/html/BioLiP/pdb.cgi in display_go (go='0003735,0005840,0006412', uniprot='', pdbid='4gkj', asym_id='Q')
484 '''.replace("$namespace_link",namespace_link
485 ).replace("$namespace",namespace
=> 486 ).replace("$uniprot",u
487 ))
488 for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined
UnboundLocalError : local variable 'u' referenced before assignment
args =
("local variable 'u' referenced before assignment",)
with_traceback =
<built-in method with_traceback of UnboundLocalError object>