Structure of PDB 1ngm Chain M Binding Site BS01
Receptor Information
>1ngm Chain M (length=180) Species:
4932
(Saccharomyces cerevisiae) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
SGIVPTLQNIVATVTLGCRLDLKTVALHARNAEYNPKRFAAVIMRIREPK
TTALIFASGKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNI
VGSCDVKFPIRLEGLAFSHGTFSSYEPELFPGLIYRMVKPKIVLLIFVSG
KIVLTGAKQREEIYQAFEAIYPVLSEFRKM
Ligand information
>1ngm Chain O (length=19) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
ctataaaaaaatgtttttt
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
1ngm
Crystal structure of a transcription factor IIIB core interface ternary complex
Resolution
2.95 Å
Binding residue
(original residue number in PDB)
V71 F116 S118 K120 Q158 N159 F190 R196 T215 G216
Binding residue
(residue number reindexed from 1)
V11 F56 S58 K60 Q98 N99 F130 R136 T155 G156
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003677
DNA binding
Biological Process
GO:0006352
DNA-templated transcription initiation
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:1ngm
,
PDBe:1ngm
,
PDBj:1ngm
PDBsum
1ngm
PubMed
12660736
UniProt
P13393
|TBP_YEAST TATA-box-binding protein (Gene Name=SPT15)
[
Back to BioLiP
]