Structure of PDB 1h0h Chain K Binding Site BS01

Receptor Information
>1h0h Chain K (length=977) Species: 879 (Megalodesulfovibrio gigas) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ATMALKTVDAKQTTSVCCYCSVGCGLIVHTDKKTNRAINVEGDPDHPINE
GSLCAKGASTWQLAENERRPANPLYRAPGSDQWEEKSWDWMLDTIAERVA
KTREATFVTKNAKGQVVNRCDGIASVGSAAMDNEECWIYQAWLRSLGLFY
IEHQARICHSATVAALAESYGRGAMTNHWIDLKNSDVILMMGSNPAENHP
ISFKWVMRAKDKGATLIHVDPRYTRTSTKCDLYAPLRSGSDIAFLNGMTK
YILEKELYFKDYVVNYTNASFIVGEGFAFEEGLFAGYNKETRKYDKSKWG
FERDENGNPKRDETLKHPRCVFQIMKKHYERYDLDKISAICGTPKELILK
VYDAYCATGKPDKAGTIMYAMGWTQHTVGVQNIRAMSINQLLLGNIGVAG
GGVNALRGEANVQGSTDHGLLMHIYPGYLGTARASIPTYEEYTKKFTPVS
KDPQSANWWSNFPKYSASYIKSMWPDADLNEAYGYLPKGEDGKDYSWLTL
FDDMFQGKIKGFFAWGQNPACSGANSNKTREALTKLDWMVNVNIFDNETG
SFWRGPDMDPKKIKTEVFFLPCAVAIEKEGSISNSGRWMQWRYVGPEPRK
NAIPDGDLIVELAKRVQKLLAKTPGKLAAPVTKLKTDYWVNDHGHFDPHK
IAKLINGFALKDFKVGDVEYKAGQQIATFGHLQADGSTTSGCWIYTGSYT
EKGNMAARRDKTQTDMQAKIGLYPGWTWAWPVNRRIIYNRASVDLNGKPY
APEKAVVEWNAAEKKWVGDVPDGPWPPQADKEKGKRAFIMKPEGYAYLYG
PGREDGPLPEYYEPMECPVIEHPFSKTLHNPTALHFATEEKAVCDPRYPF
ICSTYRVTEHWQTGLMTRNTPWLLEAEPQMFCEMSEELATLRGIKNGDKV
ILESVRGKLWAKAIITKRIKPFAIQGQQVHMVGIPWHYGWSFPKNGGDAA
NILTPSVGNPNTGIPETKAFMVNVTKA
Ligand information
Ligand ID2MD
InChIInChI=1S/C20H28N10O13P2S2/c21-19-26-13-7(15(33)28-19)24-6-12(47)11(46)5(41-17(6)25-13)2-40-45(37,38)43-44(35,36)39-1-4-9(31)10(32)18(42-4)30-3-23-8-14(30)27-20(22)29-16(8)34/h3-6,9-12,17-18,24,31-32,46-47H,1-2H2,(H,35,36)(H,37,38)(H3,22,27,29,34)(H4,21,25,26,28,33)/t4-,5-,6+,9-,10-,11+,12-,17-,18-/m1/s1
InChIKeyYDYCAANTTOPADF-JKOCJXFLSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04O=C1C=2NC3C(S)C(S)C(OC3NC=2N=C(N)N1)COP(=O)(O)OP(=O)(O)OCC6OC(n5cnc4c5N=C(N)NC4=O)C(O)C6O
CACTVS 3.341NC1=NC2=C(N[C@H]3[C@@H](S)[C@@H](S)[C@@H](CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6C(=O)NC(=Nc56)N)O[C@H]3N2)C(=O)N1
OpenEye OEToolkits 1.5.0c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]4[C@@H]([C@@H]([C@H]5[C@@H](O4)NC6=C(N5)C(=O)NC(=N6)N)S)S)O)O)N=C(NC2=O)N
OpenEye OEToolkits 1.5.0c1nc2c(n1C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OCC4C(C(C5C(O4)NC6=C(N5)C(=O)NC(=N6)N)S)S)O)O)N=C(NC2=O)N
CACTVS 3.341NC1=NC2=C(N[CH]3[CH](S)[CH](S)[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6C(=O)NC(=Nc56)N)O[CH]3N2)C(=O)N1
FormulaC20 H28 N10 O13 P2 S2
NameGUANYLATE-O'-PHOSPHORIC ACID MONO-(2-AMINO-5,6-DIMERCAPTO-4-OXO-3,5,6,7,8A,9,10,10A-OCTAHYDRO-4H-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-7-YLMETHYL) ESTER;
MOLYBDENUM COFACTOR,BIS (MOLYBDOPTERIN GUANINE DINUCLEOTIDE)
ChEMBL
DrugBank
ZINCZINC000098208208
PDB chain1h0h Chain K Residue 1001 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB1h0h Gene Sequence and the 1.8 A Crystal Structure of the Tungsten-Containing Formate Dehydrogenase from Desulfovibrio Gigas
Resolution1.8 Å
Binding residue
(original residue number in PDB)
A130 Q154 I157 U158 M371 G516 Q517 N518 S522 V542 N543 I544 C572 D605 T854 R856 Q862 T863 M866 W936 N951 T967
Binding residue
(residue number reindexed from 1)
A130 Q154 I157 U158 M371 G516 Q517 N518 S522 V542 N543 I544 C572 D605 T854 R856 Q862 T863 M866 W936 N951 T967
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) C158 M371 R407 G408 E409
Catalytic site (residue number reindexed from 1) C158 M371 R407 G408 E409
Enzyme Commision number 1.17.1.9: formate dehydrogenase.
Gene Ontology
Molecular Function
GO:0008863 formate dehydrogenase (NAD+) activity
GO:0009055 electron transfer activity
GO:0016491 oxidoreductase activity
GO:0030151 molybdenum ion binding
GO:0043546 molybdopterin cofactor binding
GO:0046872 metal ion binding
GO:0047111 formate dehydrogenase (cytochrome-c-553) activity
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0009061 anaerobic respiration
GO:0045333 cellular respiration
Cellular Component
GO:0042597 periplasmic space

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:1h0h, PDBe:1h0h, PDBj:1h0h
PDBsum1h0h
PubMed12220497
UniProtQ934F5|FDHA_MEGGA Formate dehydrogenase subunit alpha (Gene Name=fdhA)

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