Structure of PDB 6db8 Chain H Binding Site BS01

Receptor Information
>6db8 Chain H (length=224) Species: 32630 (synthetic construct) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ISEVQLVESGGGLVQPGGSLRLSCAASGFYISYSSIHWVRQAPGKGLEWV
ASISPYSGSTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCAR
QGYRRRSGRGFDYWGQGTLVTVSSASTKGPSVFPLAPSSKGGTAALGCLV
KDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQ
TYICNVNHKPSNTKVDKKVEPKSC
Ligand information
>6db8 Chain R (length=60) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggaugcgccuugaaaagccugcgaaacacgcagcuggugaaugacagcua
uggcgcaucc
<<<<<<<<<...........<<<.....>>><<<<<........>>>>>.
.>>>>>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6db8 Structural basis for activation of fluorogenic dyes by an RNA aptamer lacking a G-quadruplex motif.
Resolution1.86541 Å
Binding residue
(original residue number in PDB)		F30 Y31 Y34 P56 Y57 S58 S60 Y62 Q102 Y104 R105 R106 R110
Binding residue
(residue number reindexed from 1)		F29 Y30 Y33 P55 Y56 S57 S59 Y61 Q101 Y103 R104 R105 R109
External links