Structure of PDB 5fjw Chain F Binding Site BS01

Receptor Information
>5fjw Chain F (length=263) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DVPENNGILISIKEVINAEFSRDGTIHSSELKGVLELRINDHDLSHSNLK
LADSIDVRDKSFQFKTHPNIDKQSFLSTKLISLRDKSKAFPANDQSLGVL
RWRKVAPAEDDSLIPLTLTTAVSPSESQQGFDVIIEYESVLETELADVIF
TIPVFPQEPVDINTESSTCSDAEVVNMDQEMGTSIKISKIAANDAGALAF
TIEAPYEDALYPMTVSFQESTRDKLAKSFTGMAIQSVVMANDHDQELPYD
VITSLKSDEYLVQ
Ligand information
>5fjw Chain M (length=9) Species: 4932 (Saccharomyces cerevisiae) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
DDWNWEMED
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5fjw Structural Basis for the Binding of Tryptophan-Based Motifs by Delta-Cop.
Resolution2.8 Å
Binding residue
(original residue number in PDB)
D527 Q528 E529
Binding residue
(residue number reindexed from 1)
D244 Q245 E246
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Biological Process
GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
Cellular Component
GO:0030126 COPI vesicle coat

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:5fjw, PDBe:5fjw, PDBj:5fjw
PDBsum5fjw
PubMed26578768
UniProtP43621|COPD_YEAST Coatomer subunit delta (Gene Name=RET2)

[Back to BioLiP]