BioLiP
Structure of PDB 4v87 Chain DH Binding Site BS01
>4v87 Chain DA (length=2907)
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ggucaagaugguaagggcccacgguggaugccucggcacccgagccgaug aaggacguggcuaccugcgauaagccagggggagccgguagcgggcgugg aucccuggauguccgaaugggggaacccggccggcgggaacgccggucac cgcgcgcgcggggggaaccuggggaacugaaacaucucaguacccagagg agaggaaagagaaaucgacucccugaguagcggcgagcgaaaggggacca gccuaaaccguccggcuuguccgggcggggucguggggcccucggacacc gaauccccagccuagccgaagcuguugggaagcagcgccagagaggguga aagccccguaggcgaaagguggggggauaggugaggguacccgaguaccc cgugguucguggagccaugggggaaucugggcggaccaccgccuaaggcu aaguacuccgggugaccgauagcgcaccaguaccgugagggaaaggugaa aagaaccccgggaggggagugaaauagagccugaaaccgugggcuuacaa gcagucacggccccgcaagggguuguggcgugccuauugaagcaugagcc ggcgacucacggucgugggcgagcuuaagccguugaggcggaggcguagg gaaaccgaguccgaacagggcgcaaacggcccgcacgcgggccgaaaagu ccgcggccguggacccgaaaccgggcgagcuagcccuggccagggugaag cuggggugagacccaguggaggcccgaaccggugggggaugcaaaccccu cggaugagcuggggcuaggagugaaaagcuaaccgagcccggagauagcu gguucuccccgaaaugacuuuagggucagccucaggcgcugacuggggcc uguagagcacugauagggcuagggggcccaccagccuaccaaacccuguc aaacuccgaagggucccagguggagccugggagugagggcgcgagcgaua acguccgcguccgagcgcgggaacaaccgagaccgccagcuaaggccccc aagucugggcuaagugguaaaggauguggcgccgcgaagacagccaggau guuggcuuagaagcagccaucauuuaaagagugcguaauagcucacuggu cgaguggcgccgcgccgaaaaugaucggggcuuaagcccagcgccgaagc ugcgggucugggggaugaccccaggcgguaggggagcguucccgaugccg augaaggccgacccgcgagggcggcuggagguaagggaagugcgaaugcc ggcaugaguaacgauaaagagggugagaaucccucucgccguaagcccaa ggguuccuacgcaauggucgucagcguaggguuaggcgggaccuaaggug aagccgaaaggcguagccgaagggcagccgguuaauauuccggcccuucc cgcaggugcgauggggggacgcucuaggcuagggggaccggagccaugga cgagcccggccagaagcgcagggugggagguaggcaaauccgccucccaa caagcucugcgugguggggaagcccguacgggugacaaccccccgaagcc agggagccaagaaaagccucuaagcacaaccugcgggaacccguaccgca aaccgacacaggugggcgggugcaagagcacucaggcgcgcgggagaacc cucgccaaggaacucugcaaguuggccccguaacuucgggagaaggggug cucccuggggugaugagccccggggagccgcagugaacaggcucuggcga cuguuuaccaaaaacacagcucucugcgaacucguaagaggagguauagg gagcgacgcuugcccggugccggaaggucaaggggaggggugcaagcccc gaaccgaagccccggugaacggcggccguaacuauaacgguccuaaggua gcgaaauuccuugucggguaaguuccgaccugcacgaaaagcguaacgac cggagcgcugucucggcgagggacccggugaaauugaacuggccgugaag augcggccuacccguggcaggacgaaaagaccccguggagcuuuacugca gccugguguuggcucuuggucgcgccugcguaggauaggugggagccugu gaacccccgccuccgggugggggggaggcgccggugaaauaccacccugg cgcggcugggggccuaacccucggauggggggacagcgcuuggcgggcag uuugacuggggcggucgccuccuaaaagguaacggaggcgcccaaagguc cccucaggcgggacggaaauccgccggagagcgcaaggguagaagggggc cugacugcgaggccugcaagccgagcaggggcgaaagccgggccuaguga accgguggucccguguggaagggccaucgaucaacggauaaaaguuaccc cggggauaacaggcugaucucccccgagcguccacagcggcggggagguu uggcaccucgaugucggcucgucgcauccuggggcugaagaaggucccaa ggguugggcuguucgcccauuaaagcggcacgcgagcuggguucagaacg ucgugagacaguucggucucuauccgccacgggcgcaggaggcuugaggg gggcucuuccuaguacgagaggaccggaagggacgcaccucugguuuccc agcugucccuccaggggcauaagcuggguagccaugugcggaagggauaa ccgcugaaagcaucuaagcgggaagcccgccccaagaugaggccucccac ggcgucaagccgguaaggacccgggaagaccacccgguggaugggccggg gguguaagcgccgcgaggcguugagccgaccggucccaaucguccgaggu cuugacc
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UnboundLocalError Python 3.6.8: /usr/bin/python3 Fri May 16 23:24:20 2025
A problem occurred in a Python script. Here is the sequence of
function calls leading up to the error, in the order they occurred.
/var/www/html/BioLiP/pdb.cgi in <module> ()
1701 title=pdb2title(pdbid)
1702 if bs.startswith("BS"):
=> 1703 pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
1704 else:
1705 if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '4v87', asym_id = 'DH', bs = 'BS01', title = 'A new understanding of the decoding principle on the ribosome.'
/var/www/html/BioLiP/pdb.cgi in display_interaction (pdbid='4v87', asym_id='DH', bs='BS01', title='A new understanding of the decoding principle on the ribosome.')
1326 display_ec(ec,csaOrig,csaRenu)
1327 if go:
=> 1328 display_go(go,uniprot,pdbid,asym_id)
1329 return pubmed,uniprot
1330
global display_go = <function display_go>, go = '0003735,0005840,0006412,0019843', uniprot = '', pdbid = '4v87', asym_id = 'DH'
/var/www/html/BioLiP/pdb.cgi in display_go (go='0003735,0005840,0006412,0019843', uniprot='', pdbid='4v87', asym_id='DH')
484 '''.replace("$namespace_link",namespace_link
485 ).replace("$namespace",namespace
=> 486 ).replace("$uniprot",u
487 ))
488 for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined
UnboundLocalError : local variable 'u' referenced before assignment
args =
("local variable 'u' referenced before assignment",)
with_traceback =
<built-in method with_traceback of UnboundLocalError object>