Structure of PDB 8ok6 Chain C Binding Site BS01

Receptor Information
>8ok6 Chain C (length=368) Species: 5702 (Trypanosoma brucei brucei) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
NIGTGDNVLHRAALCGIIELAGKRAKLETALPNFQNELNSILELNMTAAE
PTWLDQFRDKDDRSKPRDLTKQPLPKDTNWADHWTAWAKAALPLLNDETH
QAKLKEYKLAGLQPEKLERARNTIRRLTAEAVAKAQDPTVAESTADLTTE
EDLQKQINQAVYSKDTEPDDDFNGYTAFEGKASTNRQTICGSAVAGSKAT
NAMDALFCVCADDRTNGADAGKACVAGTAPGTGWNPGVTATPTGTMLQKV
RKLCNTHGKTTLSAAAIEGRLTAVGNLLTRGSATSILGSFLATDCSGDQG
SGMCVAYTEVTDAKGTPTKDIPWMQKLDSVRIKLQKHERAVEKLGKPQHD
LKTILTLAKDPAYLQLAS
Ligand information
Ligand IDBMA
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5+,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-RWOPYEJCSA-N
SMILES
SoftwareSMILES
CACTVS 3.341OC[C@H]1O[C@@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.341OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.5.0C([C@@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)O)O)O)O)O
ACDLabs 10.04OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-mannopyranose;
beta-D-mannose;
D-mannose;
mannose
ChEMBL
DrugBank
ZINCZINC000003830679
PDB chain8ok6 Chain D Residue 3 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8ok6 A structural classification of the variant surface glycoproteins of the African trypanosomey.
Resolution1.75 Å
Binding residue
(original residue number in PDB)
N102 W103
Binding residue
(residue number reindexed from 1)
N79 W80
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Cellular Component
GO:0005886 plasma membrane

View graph for
Cellular Component
External links
PDB RCSB:8ok6, PDBe:8ok6, PDBj:8ok6
PDBsum8ok6
PubMed37656766
UniProtB3GVS7

[Back to BioLiP]