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BioLiP

Structure of PDB 8d3c Chain C Binding Site BS01

Receptor Information
>8d3c Chain C (length=1305) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
STARCSLFGSDFVNTFDGSMYSFAGYCSYLLAGGCQKRSFSIIGDFQNGK
RVSLSVYLGEFFDIHLFVNGTVTQGDQRVSMPYASKGLYLETEAGYYKLS
GEAYGFVARIDGSGNFQVLLSDRYFNKTCGLCGNFNIFAEDDFMTQEGTL
TSDPYDFANSWALSSGEQWCERASPPSSSCGLWEQCQLLKSTSVFARCHP
LVDPEPFVALCEKTLCECAGGLECACPALLEYARTCAQEGMVLYGWTDHS
ACSPVCPAGMEYRQCVSPCARTCQSLHINEMCQERCVDGCSCPEGQLLDE
GLCVESTECPCVHSGKRYPPGTSLSRDCNTCICRNSQWICSNEECPGECL
VTGQSHFKSFDNRYFTFSGICQYLLARDCQDHSFSIVIETVQCADDRDAV
CTRSVTVRLPGLHNSLVKLKHGAGVAMDGQDVQLPLLKGDLRIQHTVTAS
VRLSYGEDLQMDWDGRGRLLVKLSPVYAGKTCGLCGNYNGNQGDDFLTPS
GLAEPRVEDFGNAWKLHGDCQDLQKQHSDPCALNPRMTRFSEEACAVLTS
PTFEACHRAVSPLPYLRNCRYDVCSCSDGRECLCGALASYAAACAGRGVR
VAWREPGRCELNCPKGQVYLQCGTPCNLTCRSLSYPDEECNEACLEGCFC
PPGLYMDERGDCVPKAQCPCYYDGEIFQPEDIFSDHHTMCYCEDGFMHCT
MSGCAKTCQNYDLECMSMLCPPGMVRHENRCVALERCPCFHQGKEYAPGE
TVKIGCNTCVCRDRKWNCTDHVCDATCSTIGMAHYLTFDGLKYLFPGECQ
YVLVQDYCGSNPGTFRILVGNKGCSHPSVKCKKRVTILVEGGEIELFDGE
VNVKRPMKDETHFEVVESGRYIILLLGKALSVVWDRHLSISVVLKQTYQE
KVCGLCGNFDGIQNNDLTSSNLQVEEDPVDFGNSWKVSSQCADTRKVPLD
SSPATCHNNIMKQTMVDSSCRILTSDVFQDCNKLVDPEPYLDVCIYDTCS
CESIGDCACFCDTIAAYAHVCAQHGKVVTWRTATLCPQSCEERNLRENGY
ECEWRYNSCAPACQVTCQHPEPLACPVQCVEGCHAHCPPGKILDELLQTC
VDPEDCPLHDFYCSRLLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRI
SQKWVRVAVVEYHDGSHAYIGLKDRKRPSELRRIASQVKYAGSQVASTSE
VLKYTLFQIFSKIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKKKKV
IVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQRDEIVSYLCD
LAPEA
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain8d3c Chain C Residue 2000 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8d3c Structures of VWF tubules before and after concatemerization reveal a mechanism of disulfide bond exchange.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		D879 N998 D1000 I1002 N1005 D1006
Binding residue
(residue number reindexed from 1)		D789 N908 D910 I912 N915 D916
Annotation score4
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:8d3c, PDBe:8d3c, PDBj:8d3c
PDBsum8d3c
PubMed35776905
UniProtP04275|VWF_HUMAN von Willebrand factor (Gene Name=VWF)

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