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BioLiP

Structure of PDB 6ppv Chain C Binding Site BS01

Receptor Information
>6ppv Chain C (length=75) Species: 284812 (Schizosaccharomyces pombe 972h-) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIF
LKTIRKHYEMLFVRGDSVILIAPPR
Ligand information
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6ppv Molecular basis for the distinct cellular functions of the Lsm1-7 and Lsm2-8 complexes.
Resolution2.05 Å
Binding residue
(original residue number in PDB)		H42 N44 R81 G82
Binding residue
(residue number reindexed from 1)		H35 N37 R64 G65
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003682 chromatin binding
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0008266 poly(U) RNA binding
GO:0030620 U2 snRNA binding
GO:0070034 telomerase RNA binding
GO:0140691 RNA folding chaperone
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0033962 P-body assembly
GO:0034337 RNA folding
Cellular Component
GO:0000932 P-body
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005682 U5 snRNP
GO:0005686 U2 snRNP
GO:0005688 U6 snRNP
GO:0005697 telomerase holoenzyme complex
GO:0005730 nucleolus
GO:0032991 protein-containing complex
GO:0046540 U4/U6 x U5 tri-snRNP complex
GO:0071011 precatalytic spliceosome
GO:0071013 catalytic step 2 spliceosome
GO:0120115 Lsm2-8 complex
GO:0140445 chromosome, telomeric repeat region
GO:1990726 Lsm1-7-Pat1 complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6ppv, PDBe:6ppv, PDBj:6ppv
PDBsum6ppv
PubMed32518066
UniProtQ9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3 (Gene Name=lsm3)

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