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BioLiP

Structure of PDB 5gny Chain C Binding Site BS01

Receptor Information
>5gny Chain C (length=448) Species: 256318 (metagenome) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RSYRFPEGFLWGAATAAYQIEGSSMADGAGESIWDRFSHTPGNMKDGDTG
DVACDHYNRWREDIELMKRLNLQAYRFSVSWSRVIPQGRGAINPKGLAFY
DRLVDGLLEAGIEPLATLYHWDLPAALDDRGGWLNPDIADWFADYGQVLF
EKFKGRVKTWGTINEPWVIVDGGYLHGALAPGHRSAYEAVIAGHNVLRAH
GAAVRRFREVGEGQIGIVLNIEPKYPASDKPEDEAARRRAEAQMNRWFLD
PLMGRGYPEELTDVYGAAWREFPKEDFELIAEPTDWMGLNWYTRAVPENA
PDAWPTRSRPVRQTQHAHTETGWEVYPPALTDTLVWLSEQTGGKLPLMVT
ENGSAWYDPPHAIDGRIHDPMRVHYLQTHIKALHDAIGKGVDLRGYMAWS
LLDNLEWSLGYSKRFGIVHVNFATQERTIKDSGLLYAEVIKTHGDVLN
Ligand information
Ligand IDBGC
InChIInChI=1S/C6H12O6/c7-1-2-3(8)4(9)5(10)6(11)12-2/h2-11H,1H2/t2-,3-,4+,5-,6-/m1/s1
InChIKeyWQZGKKKJIJFFOK-VFUOTHLCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C(C1C(C(C(C(O1)O)O)O)O)O
CACTVS 3.370OC[C@H]1O[C@@H](O)[C@H](O)[C@@H](O)[C@@H]1O
CACTVS 3.370OC[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C([C@@H]1[C@H]([C@@H]([C@H]([C@@H](O1)O)O)O)O)O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)CO
FormulaC6 H12 O6
Namebeta-D-glucopyranose;
beta-D-glucose;
D-glucose;
glucose
ChEMBLCHEMBL1614854
DrugBankDB02379
ZINCZINC000003833800
PDB chain5gny Chain C Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5gny Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.
Resolution2.105 Å
Binding residue
(original residue number in PDB)		Q25 H126 W127 E171 Y298 E357 W405 E412 W413 F421
Binding residue
(residue number reindexed from 1)		Q19 H120 W121 E165 Y292 E351 W399 E406 W407 F415
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sun May 18 23:59:52 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1701     title=pdb2title(pdbid)
   1702     if bs.startswith("BS"):
=> 1703         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1704     else:
   1705         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5gny', asym_id = 'C', bs = 'BS01', title = 'Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5gny', asym_id='C', bs='BS01', title='Structures of a glucose-tolerant beta-glucosidase provide insights into its mechanism.')
   1326         display_ec(ec,csaOrig,csaRenu)
   1327     if go:
=> 1328         display_go(go,uniprot,pdbid,asym_id)
   1329     return pubmed,uniprot
   1330 
global display_go = <function display_go>, go = '0004553,0005975,0008422,0030245', uniprot = '', pdbid = '5gny', asym_id = 'C'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0004553,0005975,0008422,0030245', uniprot='', pdbid='5gny', asym_id='C')
    484         '''.replace("$namespace_link",namespace_link
    485           ).replace("$namespace",namespace
=>  486           ).replace("$uniprot",u
    487         ))
    488         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>