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BioLiP

Structure of PDB 6lx1 Chain A Binding Site BS01

Receptor Information
>6lx1 Chain A (length=515) Species: 4113 (Solanum tuberosum) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VPAVGEDFPIDYADWLPKRDPNDRRRAGILLHPTSFPGPYGIGDLGPQAF
KFLDWLHLAGCSLWQVLPLVPPGKRGDGSPYSGQDANCGNTLLISLEELV
DDGLLKMEELPEPLPTDRVNYSTISEIKDPLITKAAKRLLSSEGELKDQL
ENFRRDPNISSWLEDAAYFAAIDNSVNTISWYDWPEPLKNRHLAALEEVY
QSEKDFIDIFIAQQFLFQRQWKKVRDYARSKGISIMGDMPIYVGYHSADV
WANKKQFLLNRKGFPLIVSGVPPGQLWGSPLYDWKAMEKDGFSWWVRRIQ
RATDLFDEFRIDHFRGFAGFWAVPSEEKIAILGRWKVGPGKPLFDAILQA
VGKINIIAEDLGVITEDVVQLRKSIEAPGMAVLQFAFGSDAENPHLPHNH
EQNQVVYTGTHDNDTIRGWWDTLPQEEKSNVLKYLSNIEEEEISRGLIEG
AVSSVARIAIIPMQDVLGLGSDSRMNIPATQFGNWSWRIPSSTSFDNLDA
EAKKLRDILATYGRL
Ligand information
Ligand IDASO
InChIInChI=1S/C6H12O5/c7-1-4-6(10)5(9)3(8)2-11-4/h3-10H,1-2H2/t3-,4+,5+,6+/m0/s1
InChIKeyMPCAJMNYNOGXPB-SLPGGIOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.5.0C1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O
CACTVS 3.341OC[CH]1OC[CH](O)[CH](O)[CH]1O
CACTVS 3.341OC[C@H]1OC[C@H](O)[C@@H](O)[C@@H]1O
OpenEye OEToolkits 1.5.0C1C(C(C(C(O1)CO)O)O)O
ACDLabs 10.04OC1C(OCC(O)C1O)CO
FormulaC6 H12 O5
Name1,5-anhydro-D-glucitol;
1,5-ANHYDROSORBITOL
ChEMBLCHEMBL344637
DrugBank
ZINCZINC000004097377
PDB chain6lx1 Chain B Residue 1 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lx1 Structural analysis and reaction mechanism of the disproportionating enzyme (D-enzyme) from potato.
Resolution2.03 Å
Binding residue
(original residue number in PDB)		Y84 D321 H420 D421
Binding residue
(residue number reindexed from 1)		Y81 D312 H411 D412
Annotation score1
Enzymatic activity
Catalytic site (original residue number in PDB) D321 E368 D421
Catalytic site (residue number reindexed from 1) D312 E359 D412
Enzyme Commision number 2.4.1.25: 4-alpha-glucanotransferase.
Gene Ontology
Molecular Function
GO:0004134 4-alpha-glucanotransferase activity
GO:0016757 glycosyltransferase activity
Biological Process
GO:0005975 carbohydrate metabolic process
Cellular Component
GO:0009501 amyloplast
GO:0009507 chloroplast

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6lx1, PDBe:6lx1, PDBj:6lx1
PDBsum6lx1
PubMed32808707
UniProtQ06801|DPEP_SOLTU 4-alpha-glucanotransferase, chloroplastic/amyloplastic (Gene Name=DPEP)

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