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BioLiP

Structure of PDB 6l5p Chain A Binding Site BS01

Receptor Information
>6l5p Chain A (length=436) Species: 49827 (Glycyrrhiza glabra) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
HVALLPSAGMGHLTPFLRLASLLLHQHCHVTLITPQPTVSKAEEDLLSRF
LSAFPQVNQLHFHLPPPFFLQFASIRSSSHLLTPLLSSLTPPLSSFIYDM
TLISPLLPIAESLGVPHYILFTSSATMFSFFSYFPTLAKSESFPGKLDFV
EIPGVSVSSIPRSSIPPPLLVPNSLFGKLFMEDSPKLKKLHGVLVNTFEG
IEKLSLEALNGGKVVKGLPPVYGVGPFVPCEFEKVVKRGETISEWLDEQP
SGSVVYVSFGSRTAMGREQLREVGDGLVKSGWRFLWVVKDKDGVLGFELV
ERMVKEKKGLVVKEWVDQSEILGHKAVGGFVSHCGWNSVVEAAWFGVKIL
GWPLHGDQKINAEVVAKGGWGVWKEGWDWEGERLVKGEEIGEAIREVMND
ESLVMKATQVKKDARKAISVGGGCEVALQKLMEVWK
Ligand information
Ligand IDUPG
InChIInChI=1S/C15H24N2O17P2/c18-3-5-8(20)10(22)12(24)14(32-5)33-36(28,29)34-35(26,27)30-4-6-9(21)11(23)13(31-6)17-2-1-7(19)16-15(17)25/h1-2,5-6,8-14,18,20-24H,3-4H2,(H,26,27)(H,28,29)(H,16,19,25)/t5-,6-,8-,9-,10+,11-,12-,13-,14-/m1/s1
InChIKeyHSCJRCZFDFQWRP-JZMIEXBBSA-N
SMILES
SoftwareSMILES
CACTVS 3.370OC[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O)[C@H](O)[C@@H](O)[C@@H]1O
ACDLabs 12.01O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)COP(=O)(OP(=O)(OC3OC(C(O)C(O)C3O)CO)O)O
CACTVS 3.370OC[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O)[CH](O)[CH](O)[CH]1O
OpenEye OEToolkits 1.7.6C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@](=O)(O)O[P@](=O)(O)O[C@@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O
OpenEye OEToolkits 1.7.6C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(C(O3)CO)O)O)O)O)O
FormulaC15 H24 N2 O17 P2
NameURIDINE-5'-DIPHOSPHATE-GLUCOSE;
URIDINE-5'-MONOPHOSPHATE GLUCOPYRANOSYL-MONOPHOSPHATE ESTER
ChEMBLCHEMBL375951
DrugBankDB01861
ZINCZINC000008215472
PDB chain6l5p Chain A Residue 501 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6l5p Functional Characterization and Structural Basis of an Efficient Di-C-glycosyltransferase fromGlycyrrhiza glabra.
Resolution2.603 Å
Binding residue
(original residue number in PDB)		G26 T145 R285 K312 W348 V349 Q351 H366 G368 W369 N370 S371 E374 D390 Q391
Binding residue
(residue number reindexed from 1)		G11 T122 R262 K289 W315 V316 Q318 H333 G335 W336 N337 S338 E341 D357 Q358
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue May 13 05:20:57 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1701     title=pdb2title(pdbid)
   1702     if bs.startswith("BS"):
=> 1703         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1704     else:
   1705         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6l5p', asym_id = 'A', bs = 'BS01', title = 'Functional Characterization and Structural Basis... Di-C-glycosyltransferase fromGlycyrrhiza glabra.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6l5p', asym_id='A', bs='BS01', title='Functional Characterization and Structural Basis... Di-C-glycosyltransferase fromGlycyrrhiza glabra.')
   1326         display_ec(ec,csaOrig,csaRenu)
   1327     if go:
=> 1328         display_go(go,uniprot,pdbid,asym_id)
   1329     return pubmed,uniprot
   1330 
global display_go = <function display_go>, go = '0008194,0035251', uniprot = '', pdbid = '6l5p', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0008194,0035251', uniprot='', pdbid='6l5p', asym_id='A')
    484         '''.replace("$namespace_link",namespace_link
    485           ).replace("$namespace",namespace
=>  486           ).replace("$uniprot",u
    487         ))
    488         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>