Home Research COVID-19 Services Publications People Teaching Job Opening News Forum Lab Only
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP

Structure of PDB 5fbs Chain A Binding Site BS01

Receptor Information
>5fbs Chain A (length=787) Species: 265669 (Listeria monocytogenes serotype 4b str. F2365) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KPYVLKFQEIRPHSEALVGGKGMNLGACSNIEGVHVPAGFCLTTEAYKRT
LNEFTQLLQRLSEISETIRTLIQHTQIPSEIASYMDATLLDVGGYEMPFA
VRSSAAGQHDTYLNIIGKDALLQHISMCWASLFTERAIIRKVQLAVVIQQ
MISPEASGILFTADPITSNRKSLSIDASFGLGEALVSGLVSADSYTVREN
TITNKIIATKKLAIYSLKEGGTETRILEKSQQTKQTLTDQQIIQLAKLGR
KIEAYFGKPQDIEWCLAEGAFYIVQSRPITTLYPIPEVNEPGNRVYISVA
HQQMMTDAMKPLGLSFYLMTTPATMYTAGGRLFVDITQSLSAKVSRDMMV
NSLGQSDPLIKDALLTVINKKGFLPPLPTDSSSVFELVRNSENSIKHLKQ
SIETKSGSDLFDFIVEDLEELKRVLFNPTSIDAIMAGMDASNVADKLSES
APNNITSQMGLELLDVADVIRPYPAVRAYLEQTKNPDFMNELATLEGGAE
TKKALEDYLQKYGMRCAGEIDLTKTRWIENPLTLIPLILSNIKNFDSSAS
MHKFAQGEKEAFHKEQEILRAMETKEKIDILRHFIGYREYPKYGMINRYF
IYKLALLRAGEQLVKDGILQEHEDIYFLYFEELREVVRTGQVDYELINAR
KRDFATFEKLTPPRILTSDGEMINGEYKRENLPKDAILGLPVSSGTVEGR
ARVILEMEKADLEDGDILVTAYTDPSWTPAFVSIKGLVTEVGGLMTHGAV
IAREYGLPAVVGVENATTIIKDGQQIRINGTEGYIEI
Ligand information
Ligand IDMG
InChIInChI=1S/Mg/q+2
InChIKeyJLVVSXFLKOJNIY-UHFFFAOYSA-N
SMILES
SoftwareSMILES
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Mg+2]
CACTVS 3.341[Mg++]
FormulaMg
NameMAGNESIUM ION
ChEMBL
DrugBankDB01378
ZINC
PDB chain5fbs Chain A Residue 901 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB5fbs Rifampin phosphotransferase is an unusual antibiotic resistance kinase.
Resolution2.59 Å
Binding residue
(original residue number in PDB)		E297 Q309
Binding residue
(residue number reindexed from 1)		E263 Q275
Annotation score4
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue May 13 00:32:13 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1701     title=pdb2title(pdbid)
   1702     if bs.startswith("BS"):
=> 1703         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1704     else:
   1705         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '5fbs', asym_id = 'A', bs = 'BS01', title = 'Rifampin phosphotransferase is an unusual antibiotic resistance kinase.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='5fbs', asym_id='A', bs='BS01', title='Rifampin phosphotransferase is an unusual antibiotic resistance kinase.')
   1326         display_ec(ec,csaOrig,csaRenu)
   1327     if go:
=> 1328         display_go(go,uniprot,pdbid,asym_id)
   1329     return pubmed,uniprot
   1330 
global display_go = <function display_go>, go = '0005524,0016301,0016310,0016772', uniprot = '', pdbid = '5fbs', asym_id = 'A'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0005524,0016301,0016310,0016772', uniprot='', pdbid='5fbs', asym_id='A')
    484         '''.replace("$namespace_link",namespace_link
    485           ).replace("$namespace",namespace
=>  486           ).replace("$uniprot",u
    487         ))
    488         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>