Structure of PDB 1yn6 Chain A Binding Site BS01

Receptor Information
>1yn6 Chain A (length=273) Species: 10090 (Mus musculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PHSMRYFETAVSRPGLEEPRYISVGYVDNKEFVRFDSDAENPRYEPRAPW
MEQEGPEYWERETQKAKGQEQWFRVSLRNLLGYYNQSAGGSHTLQQMSGC
DLGSDWRLLRGYLQFAYEGRDYIALNEDLKTWTAADMAAQITRRKWEQSG
AAEHYKAYLEGECVEWLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTL
RCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPL
GKEQNYTCRVYHEGLPEPLTLRW
Ligand information
>1yn6 Chain C (length=10) Species: 380342 (Influenza A virus (A/swine/Iowa/15/1930(H1N1))) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
SSLENFRAYV
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB1yn6 Lack of prominent peptide-major histocompatibility complex features limits repertoire diversity in virus-specific CD8+ T cell populations
Resolution2.2 Å
Binding residue
(original residue number in PDB)		Y7 E63 K66 Q70 W73 V76 S77 Y84 Q97 Y123 T143 K146 W147 A152 H155 Y156 Y159 E163 W167 Y171
Binding residue
(residue number reindexed from 1)		Y6 E62 K65 Q69 W72 V75 S76 Y83 Q96 Y122 T142 K145 W146 A151 H154 Y155 Y158 E162 W166 Y170
Enzymatic activity
Enzyme Commision number ?
External links
PDB RCSB:1yn6, PDBe:1yn6, PDBj:1yn6
PDBsum1yn6
PubMed15785764
UniProtP01899|HA11_MOUSE H-2 class I histocompatibility antigen, D-B alpha chain (Gene Name=H2-D1)

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