Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP

Structure of PDB 8j9h Chain 1A Binding Site BS01

Receptor Information

>8j9h Chain 1A (length=352) Species: 3039 (Euglena gracilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

EAVPASILNAPVGLQPSQTVTCWIDHILCEFQYPADITVFELARRNGINI
PHFCYNRNLPIAGNCRMCMCHRVSDKKYAIACNEIAEPNAKYITVDDNLK
NIRQYILEFILANHSLDCPICDQGGECDLQDLAELYGYDTSRYDYSDIKH
EPDDMPINFLIKSDMNRCIHCTKCVRFLDNFSDDGKEGELGLMGRDPQTI
CVFRDDGNPQSYVADILSANVIEICPVGALTGRETNHETRPWEITRLDAI
NIFDGTLSAINVEVKEGTELYRVNASKDPQNPDMLLNNEFITDRAREAPQ
GNEFKRMTANYAISLDNKKLLLHHALRLYAIDPLFRSKALFLLADIMNED
RH

Ligand information

InChI=1S/2Fe.2S

NIXDOXVAJZFRNF-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04	[Fe]1S[Fe]S1
CACTVS 3.341 OpenEye OEToolkits 1.5.0	S1[Fe]S[Fe]1

Formula

Fe2 S2

Name

FE2/S2 (INORGANIC) CLUSTER

ChEMBL

DrugBank

ZINC

PDB chain

8j9h Chain 1A Residue 401 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]

PDB	8j9h Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism.
Resolution	3.11 Å
Binding residue (original residue number in PDB)	H76 C78 Y79 G87 C89 R90 C92 C106
Binding residue (residue number reindexed from 1)	H52 C54 Y55 G63 C65 R66 C68 C82
Annotation score	1

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3
Sat May 17 20:20:57 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

/var/www/html/BioLiP/pdb.cgi in <module>()

1701 title=pdb2title(pdbid)

1702 if bs.startswith("BS"):

=> 1703 pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)

1704 else:

1705 if lig3:

pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8j9h', asym_id = '1A', bs = 'BS01', title = "Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism. "

/var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8j9h', asym_id='1A', bs='BS01', title="Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism. ")

1326 display_ec(ec,csaOrig,csaRenu)

1327 if go:

=> 1328 display_go(go,uniprot,pdbid,asym_id)

1329 return pubmed,uniprot

1330

global display_go = <function display_go>, go = '0008137,0016020,0016491,0042773,0051536', uniprot = '', pdbid = '8j9h', asym_id = '1A'

/var/www/html/BioLiP/pdb.cgi in display_go(go='0008137,0016020,0016491,0042773,0051536', uniprot='', pdbid='8j9h', asym_id='1A')

484 '''.replace("$namespace_link",namespace_link

485 ).replace("$namespace",namespace

=> 486 ).replace("$uniprot",u

487 ))

488 for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
args = ("local variable 'u' referenced before assignment",)
with_traceback = <built-in method with_traceback of UnboundLocalError object>