GPCR-I-TASSER model for O00574
(CXCR6_HUMAN C-X-C chemokine receptor type 6 OS=Homo sapiens GN=CXCR6 PE=2 SV=1)
GPCR Sequence:
>sp|O00574|CXCR6_HUMAN C-X-C chemokine receptor type 6 OS=Homo sapiens GN=CXCR6 PE=2 SV=1
MAEHDYHEDYGFSSFNDSSQEEHQDFLQFSKVFLPCMYLVVFVCGLVGNSLVLVISIFYH
KLQSLTDVFLVNLPLADLVFVCTLPFWAYAGIHEWVFGQVMCKSLLGIYTINFYTSMLIL
TCITVDRFIVVVKATKAYNQQAKRMTWGKVTSLLIWVISLLVSLPQIIYGNVFNLDKLIC
GYHDEAISTVVLATQMTLGFFLPLLTMIVCYSVIIKTLLHAGGFQKHRSLKIIFLVMAVF
LLTQMPFNLMKFIRSTHWEYYAMTSFHYTIMVTEAIAYLRACLNPVLYAFVSLKFRKNFW
KLVKDIGCLPYLGVSHQWKSSEDNSKTFSASHNVEATSMFQL
Estimation of the GPCR-I-TASSER model for O00574
C-score = 0.870
TM-score = 0.830 (estimated)
RMSD = 4.7 A (estimated)
Here, C-score is a confidence score of the GPCR-I-TASSER predictions which
is typically in [-5,2]. TM-score and RMSD measure how close the
model is to the native structure and both are estimated based
on the C-score. TM-score is in [0,1] with a value >0.5 implying
the model of correct topology. The TM-score and RMSD estimations
are made only for the first model because absolute values of
TM-score and RMSD for the lower-rank models do not strongly
correlate with the C-score. The models are ranked based on the
structure density of GPCR-I-TASSER simulations.
The top ten threading templates used by GPCR-I-TASSER
Reference:
J Zhang, J Yang, R Jang, Y Zhang, Novel hybrid approach to G protein-coupled receptor structure modeling and case study on human genome, submitted, 2014.
Back to the GPCR-I-TASSER model page
|
|