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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 1 2 3 4 5 6 7 8 9 10 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0240 |
A6NND4 |
O2AT4_HUMAN |
-0.21 |
0.69 ± 0.12 |
6.8 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0241 |
Q8NGE2 |
O2AP1_HUMAN |
0.14 |
0.73 ± 0.11 |
5.9 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0242 |
P47211 |
GALR1_HUMAN |
-0.31 |
0.67 ± 0.12 |
7.2 ± 4.2 |
4djhA1,2rh1_A,4mbsA1,4ea3a,1l9ha,4djhA1,2rh1_A,4ea3a,4ea3B,4mbsA1 |
|
HG0243 |
Q9NS66 |
GP173_HUMAN |
-0.4 |
0.66 ± 0.13 |
7.5 ± 4.3 |
4iaqA,3uon_A,4iaqA,3zpqa,4ib4A,4ib4A,3uon_A,3pbla,4ib4A,4iaqA |
HG0244 |
Q8NG81 |
OR2M7_HUMAN |
0.26 |
0.75 ± 0.1 |
5.7 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0245 |
P51679 |
CCR4_HUMAN |
-1.41 |
0.54 ± 0.15 |
9.8 ± 4.6 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
HG0246 |
Q8NGM9 |
OR8D4_HUMAN |
0.18 |
0.74 ± 0.11 |
5.9 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0247 |
Q8NGL5 |
Q8NGL5_HUMAN |
-0.31 |
0.67 ± 0.13 |
7 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0248 |
Q8NGA1 |
OR1M1_HUMAN |
0.19 |
0.74 ± 0.11 |
5.9 ± 3.7 |
3uonA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
|
HG0249 |
Q9GZK6 |
OR2J1_HUMAN |
-0.12 |
0.7 ± 0.12 |
6.5 ± 3.9 |
3pblA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0250 |
Q8NGD1 |
OR4N2_HUMAN |
-0.28 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0251 |
Q96P88 |
GNRR2_HUMAN |
0.22 |
0.74 ± 0.11 |
4.6 ± 3.1 |
4iaqA1,3pbl_A,4iaqA1,3zpqa,3rzeA1,3uonA1,4grv_A,4ldea,4grvA,4iaqA1 |
HG0252 |
P30874 |
SSR2_HUMAN |
-0.27 |
0.68 ± 0.12 |
7.2 ± 4.2 |
4mbsA1,2rh1_A,4mbsA1,4ea3a,4mbsA1,4ea3B2,2rh1_A,4ea3a,4ea3B,4mbsA1 |
|
HG0253 |
Q8NGY5 |
OR6N1_HUMAN |
-0.23 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0254 |
P0C7N1 |
OR8U8_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0255 |
A4D2H9 |
A4D2H9_HUMAN |
-0.28 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0256 |
Q99677 |
LPAR4_HUMAN |
-0.92 |
0.6 ± 0.14 |
8.7 ± 4.6 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
|
HG0257 |
P0C646 |
O52Z1_HUMAN |
0.56 |
0.79 ± 0.09 |
5 ± 3.2 |
3pblA1,2rh1_A,3emlA1,2ydoa,3emlA1,1gzmA,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0258 |
A6NM03 |
O2AG2_HUMAN |
0.13 |
0.73 ± 0.11 |
6 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0259 |
Q4VBP1 |
Q4VBP1_HUMAN |
-1.69 |
0.51 ± 0.15 |
9.99 ± 4.6 |
4l6rA,4l6r_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA |
HG0260 |
O00574 |
CXCR6_HUMAN |
-1.13 |
0.57 ± 0.14 |
9 ± 4.6 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0261 |
O00254 |
PAR3_HUMAN |
0.4 |
0.77 ± 0.1 |
5.8 ± 3.6 |
4mbsA1,4ea3B,3vw7_A,4ea3B,4mbsA1,4ea3B,4mbsa,4mbsA1,4mbsA1,3vw7_A |
HG0262 |
Q8WY01 |
Q8WY01_HUMAN |
-0.16 |
0.69 ± 0.12 |
7 ± 4.1 |
3sn6R2,3uon_A,3sn6R2,3zpqa,4ib4A,4ib4A,3uon_A,3zpqa,3uonA,3sn6R2 |
|
HG0263 |
Q9NYW4 |
TA2R5_HUMAN |
-0.09 |
0.7 ± 0.12 |
6.4 ± 3.9 |
4mbsA1,3rze_A,4djhA1,2z73a,3rzeA1,2z73A,4grv_A,2z73a,3vw7A,3uonA1 |
HG0264 |
Q9NS75 |
CLTR2_HUMAN |
-1.19 |
0.57 ± 0.15 |
9.2 ± 4.6 |
4mbsA1,2rh1_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,2rh1_A,4mbsa,3vw7A,4mbsA1 |
|
HG0265 |
Q8NGJ7 |
O51A2_HUMAN |
-0.1 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0266 |
Q15760 |
GPR19_HUMAN |
-2.21 |
0.45 ± 0.15 |
9.99 ± 4.4 |
4iaqA1,2rh1_A,4iaqA1,2ycwa,1l9ha,3pblA1,2rh1_A,4ea3a,4ea3B,4iaqA1 |
|
HG0267 |
Q96CH1 |
GP146_HUMAN |
0.1 |
0.73 ± 0.11 |
6.2 ± 3.8 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,2lnlA,4grv_A,4ea3a,4ea3B,4mbsA1 |
HG0268 |
Q6IEZ2 |
Q6IEZ2_HUMAN |
0.74 |
0.81 ± 0.09 |
4.6 ± 3 |
4iaqA1,4dkl_A,3emlA1,2ydoa,3emlA1,2z73A,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0269 |
Q8NGC4 |
O10G3_HUMAN |
-0.23 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0270 |
Q86SJ4 |
Q86SJ4_HUMAN |
-0.3 |
0.67 ± 0.12 |
7 ± 4.1 |
4iaqA1,3uon_A,3emlA1,3emla,3emlA1,2z73A,4grv_A,2ydoa,3emlA1,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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