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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 1 2 3 4 5 6 7 8 9 10 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0150 |
Q15617 |
OR8G1_HUMAN |
0 |
0.71 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0151 |
P30988 |
CALCR_HUMAN |
-1.98 |
0.48 ± 0.15 |
9.99 ± 4.4 |
4l6rA,4l6r_A,4l6rA,4l6ra,4l6rA,4l6rA,4k5y_A,4l6ra,4l6rA,4l6rA |
HG0152 |
Q7Z602 |
GP141_HUMAN |
1.14 |
0.87 ± 0.07 |
3.9 ± 2.6 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4ea3a,3vw7A,4mbsA1 |
|
HG0153 |
Q8NGR9 |
OR1N2_HUMAN |
-0.78 |
0.62 ± 0.14 |
8.1 ± 4.4 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0154 |
Q86SQ3 |
EMR4_HUMAN |
-2.05 |
0.47 ± 0.15 |
9.99 ± 4.4 |
4k5yA2,4l6r_A,4l6rA,4l6ra,4l6rA,4l6ra,4l6rA2,4l6rA,4k5y_A,4l6r_A |
|
HG0155 |
Q6NWR6 |
Q6NWR6_HUMAN |
-1.53 |
0.53 ± 0.15 |
9.99 ± 4.6 |
4mbsA1,3vw7_A,4mbsA1,4ea3a,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
HG0156 |
P35372 |
OPRM_HUMAN |
-1.52 |
0.53 ± 0.15 |
9.99 ± 4.6 |
4dkl_A,4dkl_A,4ej4a,4ej4a,4ea3B2,4ea3B,4ea3B,4ea3B2,4ea3B2,4ea3B |
|
HG0157 |
Q502V2 |
Q502V2_HUMAN |
-2.43 |
0.43 ± 0.14 |
9.99 ± 4.2 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4ea3B,4mbsA1 |
HG0158 |
P0C7N8 |
OR9G9_HUMAN |
-0.26 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0159 |
Q8N148 |
OR6V1_HUMAN |
-0.08 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0160 |
Q8NHA1 |
Q8NHA1_HUMAN |
-1.46 |
0.54 ± 0.15 |
9.6 ± 4.6 |
3uonA1,2rh1_A,3emlA1,3emla,3emlA1,4iaqA1,4grv_A,3sn6r,3emlA1,3emlA1 |
|
HG0161 |
B9EGX1 |
B9EGX1_HUMAN |
-0.28 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
HG0162 |
Q8NGD8 |
Q8NGD8_HUMAN |
0.53 |
0.78 ± 0.09 |
4.9 ± 3.2 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,2z73A,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0163 |
Q4KKW2 |
Q4KKW2_HUMAN |
0.31 |
0.75 ± 0.1 |
6 ± 3.7 |
2ks9A,2ks9_A,2ks9A,2ks9a,2ks9A,2ks9A,3odu_A,2ks9a,2ks9A,2ks9A |
HG0164 |
P34969 |
5HT7R_HUMAN |
-2.47 |
0.43 ± 0.14 |
9.99 ± 4.1 |
4ib4A,2rh1_A,4iaqA1,3zpqa,4ib4A,4ib4A,2rh1_A,3zpqa,3sn6R,4iaqA1 |
|
HG0165 |
O43193 |
MTLR_HUMAN |
-0.36 |
0.67 ± 0.13 |
7.7 ± 4.3 |
2ks9A,3odu_A,2ks9A,2ks9a,2ks9A,3sn6R2,2rh1_A,2ks9a,2ks9A,2ks9A |
HG0166 |
P28223 |
5HT2A_HUMAN |
-2.32 |
0.44 ± 0.14 |
9.99 ± 4.2 |
4ib4A,2ks9A,2rh1_A,2ks9A,3zpqa,2ks9A,4ib4A,2ks9A,4ib4A,3odu_A |
|
HG0167 |
Q6NWQ5 |
Q6NWQ5_HUMAN |
-0.15 |
0.69 ± 0.12 |
6.8 ± 4 |
4mbsA1,3odu_A,4mbsA1,4ea3a,4mbsA1,4ea3B2,3odu_A,4ea3a,4djhA,4mbsA1 |
HG0168 |
B9EIM5 |
B9EIM5_HUMAN |
-0.08 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0169 |
Q13258 |
PD2R_HUMAN |
0.18 |
0.74 ± 0.11 |
6.2 ± 3.8 |
2z73A,2rh1_A,2ks9A,2z73a,1l9ha,2z73A,2rh1_A,3zpqa,2ks9A,2ks9A |
HG0170 |
Q8NGR8 |
OR1L8_HUMAN |
0.08 |
0.72 ± 0.11 |
6.1 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0171 |
Q8NGB6 |
OR4M2_HUMAN |
-0.34 |
0.67 ± 0.13 |
7 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0172 |
P25025 |
CXCR2_HUMAN |
-0.24 |
0.68 ± 0.12 |
7.1 ± 4.2 |
2lnl_A,2lnlA,2lnlA,2lnlA,2lnlA,2lnlA,2lnl_A,2lnlA,2lnlA,2lnlA |
|
HG0173 |
B2RUT5 |
B2RUT5_HUMAN |
0.27 |
0.75 ± 0.1 |
5.7 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0174 |
Q5QIP1 |
Q5QIP1_HUMAN |
-1.3 |
0.55 ± 0.15 |
9.5 ± 4.6 |
4mbsA,4mbsA,4mbsa,4mbsA,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1,4mbsA1 |
|
HG0175 |
Q8NH94 |
OR1L1_HUMAN |
-0.04 |
0.71 ± 0.12 |
6.7 ± 4 |
1l9ha,4iaqA1,3sn6r,4grv_A,3sn6R,3emlA1,3emlA1,4iaqA1,4grv_A,3emlA1 |
HG0176 |
P59922 |
OR2B8_HUMAN |
0.15 |
0.73 ± 0.11 |
5.9 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0177 |
Q2YD89 |
Q2YD89_HUMAN |
-0.5 |
0.65 ± 0.13 |
7.8 ± 4.4 |
2rh1_A,2ziyA,4iaqA1,2ziya,2rh1_A,2z73A,2z73a,1l9ha,2z73A,1l9ha |
HG0178 |
Q68CR4 |
Q68CR4_HUMAN |
0.5 |
0.78 ± 0.1 |
5.5 ± 3.5 |
1u19A,1u19_A,2g87A,1l9ha,1l9ha,1gzmA,1u19_A,1l9ha,2ziyA,2g87A |
|
HG0179 |
Q8TBK4 |
Q8TBK4_HUMAN |
-0.47 |
0.65 ± 0.13 |
7.6 ± 4.3 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
HG0180 |
O76002 |
OR2J2_HUMAN |
-0.02 |
0.71 ± 0.12 |
6.3 ± 3.9 |
3pblA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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