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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 31 32 33 34 35 36 37 38 39 40 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0990 |
B5B0C2 |
B5B0C2_HUMAN |
0.39 |
0.77 ± 0.1 |
5.6 ± 3.5 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
|
HG0991 |
Q38L21 |
Q38L21_HUMAN |
-1.26 |
0.56 ± 0.15 |
9.4 ± 4.6 |
4mbsA,4mbs_A,4mbsA,4mbs_A,4mbsa,4mbsA,4mbsA,4mbsa,4mbsA1,4mbsA1 |
HG0992 |
B9EIN5 |
B9EIN5_HUMAN |
-0.23 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0993 |
Q9P1Q5 |
OR1A1_HUMAN |
0.1 |
0.73 ± 0.11 |
6 ± 3.7 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0994 |
O43749 |
OR1F1_HUMAN |
-0.13 |
0.7 ± 0.12 |
6.5 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0995 |
P49682 |
CXCR3_HUMAN |
-1.21 |
0.56 ± 0.15 |
9.4 ± 4.6 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
HG0996 |
O95977 |
S1PR4_HUMAN |
0.02 |
0.72 ± 0.11 |
6.7 ± 4 |
2ks9A,4mbs_A,2ks9A,2ks9a,1l9ha,3pblA1,3v2y_A,2ks9a,2ks9A,2ks9A |
|
HG0997 |
Q3SAH0 |
Q3SAH0_HUMAN |
0.16 |
0.73 ± 0.11 |
6.1 ± 3.8 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3vw7_A,4mbsa,3vw7A,4mbsA1 |
HG0998 |
Q6UR96 |
Q6UR96_HUMAN |
-0.74 |
0.62 ± 0.14 |
7.9 ± 4.4 |
4iaqA1,4mbs_A,3emlA1,3zpqa,2rh1A1,4iaqA1,2rh1_A,3zpqa,3sn6R,3emlA1 |
|
HG0999 |
Q8NGK6 |
O52I1_HUMAN |
-0.32 |
0.67 ± 0.13 |
7.1 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
HG1000 |
Q9NYW7 |
TA2R1_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.6 ± 4 |
4djhA1,4mbs_A,4djhA1,2z73a,3rzeA1,2z73A,3rze_A,2ks9a,3vw7A,3uonA1 |
|
HG1001 |
Q8NH42 |
OR4KD_HUMAN |
-0.21 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG1002 |
P28222 |
5HT1B_HUMAN |
-1.64 |
0.51 ± 0.15 |
9.99 ± 4.6 |
4iar_A,4iar_A,4iaqA,4iaqA,4iaqA,4iaqA,4iaqa,4iaqA1,4iaqA1,4iaqA |
|
HG1003 |
Q0IIN4 |
Q0IIN4_HUMAN |
-2.15 |
0.46 ± 0.15 |
9.99 ± 4.4 |
2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,2ks9A,2ks9_A,2ks9a,2ks9A,2ks9A |
HG1004 |
Q8NGL1 |
OR5DI_HUMAN |
0 |
0.71 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG1005 |
Q9Y5Y4 |
PD2R2_HUMAN |
-0.29 |
0.68 ± 0.12 |
7.4 ± 4.3 |
4mbsA1,2ks9A,4mbs_A,2ks9A,4mbsA1,2ks9A,4ea3a,2ks9a,4mbsA1,2ks9a |
HG1006 |
O60404 |
O10H3_HUMAN |
-0.22 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG1007 |
Q15615 |
OR4D1_HUMAN |
-0.16 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG1008 |
B9EGY8 |
B9EGY8_HUMAN |
-0.26 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG1009 |
Q8NGQ4 |
O10Q1_HUMAN |
-0.28 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG1010 |
O60403 |
O10H2_HUMAN |
-0.29 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG1011 |
Q0IJ71 |
Q0IJ71_HUMAN |
0.79 |
0.82 ± 0.08 |
4.6 ± 3 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3vw7_A,4mbsa,3vw7A,4mbsA1 |
HG1012 |
Q9BZJ6 |
GPR63_HUMAN |
-1.74 |
0.5 ± 0.15 |
9.99 ± 4.6 |
4iaqA1,4mbs_A,2ks9A,2ks9a,2rh1A1,3uonA1,4grv_A,3zpqa,2ks9A,2ks9A |
|
HG1013 |
Q8NH67 |
O52I2_HUMAN |
-1.58 |
0.52 ± 0.15 |
9.99 ± 4.6 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
HG1014 |
Q8NGT0 |
O13C9_HUMAN |
-0.06 |
0.71 ± 0.12 |
6.5 ± 3.9 |
3pblA1,4mbs_A,3emlA1,2ydoa,3emlA1,3sn6R2,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG1015 |
Q8NGY2 |
OR6K2_HUMAN |
-0.37 |
0.67 ± 0.13 |
7.2 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
HG1016 |
Q8NGP6 |
OR5M8_HUMAN |
0.07 |
0.72 ± 0.11 |
6.1 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG1017 |
P04001 |
OPSG_HUMAN |
0.03 |
0.72 ± 0.11 |
6.5 ± 4 |
2z73A,1u19_A,2ks9A,1l9ha,1l9ha,1gzmA,1u19_A,1l9ha,2ziyA,2ks9A |
HG1018 |
P47893 |
OR3A2_HUMAN |
-0.86 |
0.61 ± 0.14 |
8.2 ± 4.5 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG1019 |
Q8NG76 |
O2T33_HUMAN |
0.07 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG1020 |
Q8NGJ3 |
O52E1_HUMAN |
-0.21 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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