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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 21 22 23 24 25 26 27 28 29 30 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0840 |
Q8NGR4 |
OR5C1_HUMAN |
-0.17 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0841 |
Q9NSD7 |
RL3R1_HUMAN |
-1.77 |
0.5 ± 0.15 |
9.99 ± 4.5 |
4mbsA1,4mbs_A,4mbsA1,2ks9a,4mbsA1,4mbsA1,4mbs_A,4mbsa,4ea3B,4mbsA1 |
HG0842 |
Q9NS67 |
GPR27_HUMAN |
-0.46 |
0.65 ± 0.13 |
7.7 ± 4.3 |
4ib4A,3uon_A,4ib4A,4iaqa,4ib4A,4iaqA1,3pbl_A,3pbla,4ib4A,4iaqA1 |
|
HG0843 |
P34998 |
CRFR1_HUMAN |
-3.88 |
0.3 ± 0.1 |
9.99 ± 2.8 |
4k5y_A,4k5y_A,4k5yA2,4k5yA,4k5yA2,4k5yA2,4k5yA,4k5ya,4k5yA,4k5yA |
HG0844 |
Q8NGF1 |
O52R1_HUMAN |
-0.1 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
|
HG0845 |
Q9NPB9 |
ACKR4_HUMAN |
-1.21 |
0.56 ± 0.15 |
9.3 ± 4.6 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
HG0846 |
Q8NHA8 |
OR1FC_HUMAN |
-0.35 |
0.67 ± 0.13 |
7.2 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0847 |
Q9BY21 |
GPR87_HUMAN |
-0.77 |
0.62 ± 0.14 |
8.3 ± 4.5 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
HG0848 |
Q8NGU1 |
OR9A1_HUMAN |
-0.25 |
0.68 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,4mbs_A,3emlA1,3emla,3emlA1,3sn6R2,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0849 |
Q8NH44 |
Q8NH44_HUMAN |
0.14 |
0.73 ± 0.11 |
5.9 ± 3.7 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0850 |
Q7Z5H5 |
VN1R4_HUMAN |
-0.49 |
0.65 ± 0.13 |
7.3 ± 4.2 |
4mbsA1,4mbs_A,4grvA1,2z73a,4jkvA2,2z73A,2rh1_A,2ks9a,2ks9A,4grvA1 |
|
HG0851 |
Q68DM8 |
Q68DM8_HUMAN |
-0.92 |
0.6 ± 0.14 |
8.7 ± 4.5 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
HG0852 |
Q8NGG3 |
OR5T3_HUMAN |
-1.57 |
0.52 ± 0.15 |
9.99 ± 4.6 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0853 |
Q6IF01 |
Q6IF01_HUMAN |
-0.26 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0854 |
A4D1U1 |
A4D1U1_HUMAN |
-0.19 |
0.69 ± 0.12 |
6.6 ± 4 |
4mbsA1,4mbs_A,4djhA1,3vg9a,4jkvA2,1gzmA,3vw7_A,2ks9a,3vw7A,4djhA1 |
|
HG0855 |
Q9GZQ6 |
NPFF1_HUMAN |
-0.64 |
0.63 ± 0.13 |
8.4 ± 4.5 |
2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,2ks9A,4mbs_A,2ks9a,2ks9A,2ks9A |
HG0856 |
B9EIM4 |
B9EIM4_HUMAN |
-0.17 |
0.69 ± 0.12 |
6.6 ± 4 |
3pblA1,4mbs_A,3emlA1,1l9ha,3emlA1,3v2wA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0857 |
Q96RD3 |
O52E6_HUMAN |
-0.21 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0858 |
Q6NWR3 |
Q6NWR3_HUMAN |
-0.99 |
0.59 ± 0.14 |
9.2 ± 4.6 |
2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,2ks9A,4mbs_A,2ks9a,2ks9A,2ks9A |
|
HG0859 |
Q6LEE7 |
Q6LEE7_HUMAN |
0.4 |
0.77 ± 0.1 |
5.7 ± 3.6 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
HG0860 |
O95499 |
O95499_HUMAN |
0 |
0.71 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0861 |
Q96RG8 |
Q96RG8_HUMAN |
-0.28 |
0.68 ± 0.12 |
7.8 ± 4.4 |
4ib4A,3uon_A,3uonA,3uona,4ib4A,3uonA,2rh1_A,3uona,3uonA,3uonA |
HG0862 |
Q6TTN3 |
Q6TTN3_HUMAN |
-0.16 |
0.69 ± 0.12 |
7 ± 4.1 |
4mbsA1,4mbs_A,4grvA1,2ks9a,1l9ha,1gzmA,4mbs_A,4ea3a,2ks9A,2ks9A |
|
HG0863 |
Q9UGF5 |
O14J1_HUMAN |
0.17 |
0.74 ± 0.11 |
6 ± 3.7 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0864 |
Q4VBN6 |
Q4VBN6_HUMAN |
0.5 |
0.78 ± 0.1 |
5.6 ± 3.5 |
4mbsA1,4ea3B,4mbs_A,4ea3B,4mbsA1,4ea3B,4mbsa,4mbsA1,4mbsA1,3vw7_A |
|
HG0865 |
Q8NGX6 |
O10R2_HUMAN |
-0.93 |
0.6 ± 0.14 |
8.5 ± 4.5 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,2z73A,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0866 |
P47890 |
OR1G1_HUMAN |
0.03 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0867 |
Q9H2C8 |
O51V1_HUMAN |
-0.75 |
0.62 ± 0.14 |
8 ± 4.4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0868 |
Q5JQS5 |
OR2BB_HUMAN |
-0.14 |
0.7 ± 0.12 |
6.6 ± 4 |
3uonA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0869 |
Q6NWM5 |
Q6NWM5_HUMAN |
0.48 |
0.78 ± 0.1 |
5.5 ± 3.5 |
4iaqA1,4mbs_A,4iaqA1,2z73a,2rh1A1,3sn6R2,3uon_A,3zpqa,3sn6R,4iaqA1 |
HG0870 |
Q8NH81 |
O10G6_HUMAN |
-0.89 |
0.6 ± 0.14 |
8.4 ± 4.5 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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