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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 21 22 23 24 25 26 27 28 29 30 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0780 |
Q8NGP2 |
OR8J1_HUMAN |
0.07 |
0.72 ± 0.11 |
6.2 ± 3.8 |
3pblA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0781 |
P59540 |
T2R46_HUMAN |
-0.07 |
0.7 ± 0.12 |
6.4 ± 3.9 |
4djhA1,4mbs_A,4djhA1,2z73a,3a6pA1,1gzmA,3eml_A,2ks9a,2ks9A,4djhA1 |
HG0782 |
Q8NHA2 |
Q8NHA2_HUMAN |
-0.28 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0783 |
P0C629 |
O10J4_HUMAN |
-0.27 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0784 |
B2RNC7 |
B2RNC7_HUMAN |
-0.1 |
0.7 ± 0.12 |
6.5 ± 3.9 |
3pblA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0785 |
Q495I5 |
Q495I5_HUMAN |
0.15 |
0.73 ± 0.11 |
5.9 ± 3.7 |
4djhA1,4mbs_A,4djhA1,3vg9a,3rzeA1,1gzmA,3odu_A,2ks9a,3vw7A,4djhA1 |
HG0786 |
P46092 |
CCR10_HUMAN |
-1.57 |
0.52 ± 0.15 |
9.99 ± 4.6 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0787 |
Q8NGF3 |
O51D1_HUMAN |
-0.66 |
0.63 ± 0.14 |
7.8 ± 4.4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
HG0788 |
Q8NH92 |
OR1S1_HUMAN |
-0.68 |
0.63 ± 0.14 |
7.9 ± 4.4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0789 |
Q8NGF9 |
OR4X2_HUMAN |
0 |
0.71 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,2z73A,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0790 |
P30968 |
GNRHR_HUMAN |
0.25 |
0.75 ± 0.11 |
5.8 ± 3.6 |
4grvA1,4mbs_A,2ks9A1,2ks9a,2ks9A1,2ks9A1,2rh1_A,4ea3a,2ks9A,2ks9A1 |
|
HG0791 |
Q9UBY5 |
LPAR3_HUMAN |
0.58 |
0.79 ± 0.09 |
5.3 ± 3.4 |
3sn6R2,4mbs_A,2ks9A,3vg9a,2rh1A1,3pblA1,3v2y_A,3zpqa,3emlA,2ks9A |
HG0792 |
Q8NGH9 |
O52E4_HUMAN |
-0.28 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
|
HG0793 |
P30518 |
V2R_HUMAN |
0.66 |
0.8 ± 0.09 |
5.2 ± 3.4 |
2ks9A,4mbs_A,2ks9A,2ks9a,1l9ha,3sn6R2,2rh1_A,2ks9a,2ks9A,2ks9A |
HG0794 |
Q8NGZ2 |
O14K1_HUMAN |
0.33 |
0.76 ± 0.1 |
5.6 ± 3.5 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0795 |
Q9H1Y3 |
OPN3_HUMAN |
-0.36 |
0.67 ± 0.13 |
7.6 ± 4.3 |
2z73A,4mbs_A,2ks9A,2z73a,1l9ha,1gzmA,2rh1_A,1l9ha,2ziyA,2ks9A |
HG0796 |
O00270 |
GPR31_HUMAN |
0.22 |
0.74 ± 0.11 |
5.8 ± 3.7 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
|
HG0797 |
Q1JUL9 |
Q1JUL9_HUMAN |
-0.49 |
0.65 ± 0.13 |
7.4 ± 4.2 |
4iaqA1,4mbs_A,4iaqA1,3vg9a,2rh1A1,4iaqA1,2rh1_A,3zpqa,3sn6R,4iaqA1 |
HG0798 |
Q9GZK7 |
O11A1_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
|
HG0799 |
Q6IF82 |
O4A47_HUMAN |
-0.2 |
0.69 ± 0.12 |
6.7 ± 4 |
3pblA1,4mbs_A,3emlA1,1l9ha,3emlA1,3v2wA1,3uon_A,2ydoa,3emlA1,3emlA1 |
HG0800 |
P41968 |
MC3R_HUMAN |
-1.13 |
0.57 ± 0.14 |
9.1 ± 4.6 |
4iaqA1,4mbs_A,3emlA1,2ydoa,4iaqA1,4iaqA1,2rh1_A,4ldea,3sn6R,3emlA1 |
|
HG0801 |
B9EIN2 |
B9EIN2_HUMAN |
-0.22 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0802 |
Q6FHU6 |
Q6FHU6_HUMAN |
-1.23 |
0.56 ± 0.15 |
9.5 ± 4.6 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0803 |
Q8NH05 |
OR4Q3_HUMAN |
-0.22 |
0.69 ± 0.12 |
6.8 ± 4 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0804 |
P25024 |
CXCR1_HUMAN |
0.37 |
0.76 ± 0.1 |
5.7 ± 3.6 |
2lnl_A,2lnlA,2lnlA,2lnlA,2lnlA,2lnlA,2lnlA,2lnlA,2lnl_A,2lnlA |
|
HG0805 |
B9EIN7 |
B9EIN7_HUMAN |
-0.19 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3sn6R2,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0806 |
Q8NGH6 |
O52L2_HUMAN |
-0.85 |
0.61 ± 0.14 |
8.2 ± 4.5 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
|
HG0807 |
Q502V5 |
Q502V5_HUMAN |
-0.06 |
0.71 ± 0.12 |
6.3 ± 3.9 |
4mbsA1,4mbs_A,4djhA1,2ks9a,3rzeA1,2z73A,3odu_A,2ks9a,3vw7A,3pblA1 |
HG0808 |
P47888 |
OR3A3_HUMAN |
-0.29 |
0.68 ± 0.12 |
7 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0809 |
P32246 |
CCR1_HUMAN |
-1.2 |
0.57 ± 0.15 |
9.3 ± 4.6 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,4mbs_A,4mbsa,4mbsA,4mbsA1 |
HG0810 |
O95918 |
OR2H2_HUMAN |
0.28 |
0.75 ± 0.1 |
5.7 ± 3.6 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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