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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 21 22 23 24 25 26 27 28 29 30 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0750 |
Q8NGC1 |
O11G2_HUMAN |
-1.72 |
0.51 ± 0.15 |
9.99 ± 4.6 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0751 |
Q8NH85 |
OR5R1_HUMAN |
-0.14 |
0.7 ± 0.12 |
6.7 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0752 |
Q5VZX0 |
Q5VZX0_HUMAN |
-0.25 |
0.68 ± 0.12 |
7.2 ± 4.2 |
3sn6R2,3v2y_A,2ks9A,3vg9a,2rh1A1,3pblA1,3v2y_A,3zpqa,3emlA,2ks9A |
|
HG0753 |
Q6IF63 |
O52W1_HUMAN |
-0.36 |
0.67 ± 0.13 |
7.1 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0754 |
Q6NWR7 |
Q6NWR7_HUMAN |
-2.02 |
0.47 ± 0.15 |
9.99 ± 4.5 |
4iaqA1,4mbs_A,2ks9A,2ks9a,2rh1A1,3uonA1,3odu_A,3zpqa,2ks9A,2ks9A |
|
HG0755 |
Q8NGP9 |
O5AR1_HUMAN |
-0.09 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0756 |
Q9Y5Y3 |
GPR45_HUMAN |
0.8 |
0.82 ± 0.08 |
5 ± 3.2 |
2ks9A,4mbs_A,2ks9A,2ks9a,2rh1A1,3sn6R2,2rh1_A,3zpqa,2ks9A,2ks9A |
|
HG0757 |
P0C7N5 |
OR8U9_HUMAN |
0.03 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0758 |
P47871 |
GLR_HUMAN |
-1.76 |
0.5 ± 0.15 |
9.99 ± 4.5 |
4l6ra,4l6rA,4l6rA,4l6ra,4l6rA,4l6rA,4l6r_A,4l6r_A,4l6rA,4l6rA |
|
HG0759 |
P0C604 |
OR4A8_HUMAN |
-0.28 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,3v2wA1,3uon_A,2ydoa,3emlA1,3emlA1 |
HG0760 |
Q15622 |
OR7A5_HUMAN |
-0.09 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0761 |
Q92633 |
LPAR1_HUMAN |
-0.28 |
0.68 ± 0.12 |
7.2 ± 4.2 |
3sn6R2,3v2y_A,2ks9A,3vg9a,2rh1A1,3pblA1,3v2y_A,3zpqa,3emlA,2ks9A |
HG0762 |
B9EK41 |
B9EK41_HUMAN |
-1.04 |
0.58 ± 0.14 |
9.3 ± 4.6 |
2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,3pblA1,2rh1_A,2ks9a,2ks9A,2ks9A |
|
HG0763 |
Q8NGE7 |
OR9K2_HUMAN |
-0.98 |
0.59 ± 0.14 |
8.6 ± 4.5 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0764 |
A6NF89 |
OR6C6_HUMAN |
0 |
0.71 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0765 |
Q3S2J4 |
Q3S2J4_HUMAN |
-0.4 |
0.66 ± 0.13 |
7.8 ± 4.4 |
2ks9A,2rh1_A,2ks9A,2ks9a,2ks9A,2ks9A,2rh1_A,2ks9a,2ks9A,2ks9A |
HG0766 |
Q9H346 |
O52D1_HUMAN |
-0.49 |
0.65 ± 0.13 |
7.4 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
|
HG0767 |
Q9BYY6 |
Q9BYY6_HUMAN |
-0.45 |
0.66 ± 0.13 |
7.4 ± 4.2 |
4iaqA1,4mbs_A,4iaqA1,4ldea,4iaqA1,4iaqA1,3odu_A,3zpqa,3sn6R,3sn6R2 |
HG0768 |
O95665 |
NTR2_HUMAN |
-0.12 |
0.7 ± 0.12 |
7.1 ± 4.2 |
4mbsA,4grv_A,2ks9A,2ycya,3rzeA1,3sn6R2,4grv_A,3zpqa,2ks9A,2ks9A |
|
HG0769 |
B2RUT4 |
B2RUT4_HUMAN |
-0.27 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0770 |
Q8NGK2 |
O52B4_HUMAN |
-0.39 |
0.66 ± 0.13 |
7.1 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
|
HG0771 |
Q6UR92 |
Q6UR92_HUMAN |
-0.5 |
0.65 ± 0.13 |
7.4 ± 4.3 |
4iaqA1,4mbs_A,4iaqA1,3zpqa,2rh1A1,4iaqA1,2rh1_A,3zpqa,3sn6R,3emlA1 |
HG0772 |
Q8IWP3 |
Q8IWP3_HUMAN |
-1.78 |
0.5 ± 0.15 |
9.99 ± 4.6 |
4djhA,4djha,4djhA,4djhA1,4djhA1,4djhA1,4djha,4djhA,4djhA1,4djhA |
|
HG0773 |
O43613 |
OX1R_HUMAN |
-0.3 |
0.67 ± 0.12 |
7.6 ± 4.3 |
2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,3sn6R2,4mbs_A,2ks9a,2ks9A,2ks9A |
HG0774 |
P35462 |
DRD3_HUMAN |
-0.58 |
0.64 ± 0.13 |
8.1 ± 4.4 |
3pblA,3pbla,3pblA,3pblA,3pblA,3pbla,3pblA,3pbl_A,3pbl_A,3pblA |
|
HG0775 |
P35346 |
SSR5_HUMAN |
0.24 |
0.75 ± 0.11 |
6.1 ± 3.8 |
4mbsA1,4mbs_A,4mbsA1,4ea3a,4mbsA1,4ea3B2,3odu_A,4ea3a,4ea3B,2ks9A |
HG0776 |
P35410 |
MAS1L_HUMAN |
-0.44 |
0.66 ± 0.13 |
7.7 ± 4.3 |
4mbsA1,4mbs_A,4ea3B,4ea3a,4mbsA1,4djhA1,4mbs_A,2ks9a,4ea3B,2ks9A |
|
HG0777 |
Q0PJU0 |
Q0PJU0_HUMAN |
1.21 |
0.88 ± 0.07 |
4 ± 2.7 |
1u19A,4mbs_A,2ks9A,1l9ha,1l9ha,1gzmA,2rh1_A,1l9ha,2ziyA,2ks9A |
HG0778 |
Q8NGB2 |
OR4C5_HUMAN |
-1.08 |
0.58 ± 0.14 |
8.8 ± 4.6 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0779 |
A6NL08 |
O6C75_HUMAN |
0.26 |
0.75 ± 0.1 |
5.7 ± 3.6 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
HG0780 |
Q8NGP2 |
OR8J1_HUMAN |
0.07 |
0.72 ± 0.11 |
6.2 ± 3.8 |
3pblA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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