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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 21 22 23 24 25 26 27 28 29 30 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0660 |
Q9P1P5 |
TAAR2_HUMAN |
-0.56 |
0.64 ± 0.13 |
7.8 ± 4.4 |
3sn6R2,2rh1_A,4iaqA1,2ycwa,2rh1A1,4iaqA1,2rh1_A,3zpqa,3sn6R,2rh1A1 |
|
HG0661 |
O95838 |
GLP2R_HUMAN |
-2.47 |
0.43 ± 0.14 |
9.99 ± 4 |
4l6rA,4k5y_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA |
HG0662 |
Q9H2C7 |
Q9H2C7_HUMAN |
0.52 |
0.78 ± 0.09 |
5 ± 3.2 |
3pblA1,2rh1_A,3emlA1,2ydoa,3emlA1,1gzmA,2rh1_A,4gpoa,3emlA1,3emlA1 |
|
HG0663 |
Q8NG99 |
OR7G2_HUMAN |
-0.03 |
0.71 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0664 |
Q86YG9 |
Q86YG9_HUMAN |
-1.57 |
0.52 ± 0.15 |
9.99 ± 4.6 |
4k5yA2,4l6r_A,4l6rA,4l6ra,4l6rA2,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA2 |
|
HG0665 |
P41587 |
VIPR2_HUMAN |
-0.35 |
0.67 ± 0.13 |
7.8 ± 4.4 |
4l6rA,4k5y_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA |
HG0666 |
Q9NYW0 |
T2R10_HUMAN |
-0.06 |
0.71 ± 0.12 |
6.4 ± 3.9 |
4mbsA1,2rh1_A,4djhA1,2z73a,3rzeA1,1gzmA,3uon_A,2ks9a,3vw7A,4djhA1 |
|
HG0667 |
P0C626 |
OR5G3_HUMAN |
-0.36 |
0.67 ± 0.13 |
7.1 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0668 |
Q96RD0 |
OR8B2_HUMAN |
-0.32 |
0.67 ± 0.13 |
7 ± 4.1 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0669 |
O60883 |
ETBR2_HUMAN |
-1.33 |
0.55 ± 0.15 |
9.99 ± 4.6 |
2ks9A,4ea3B,4grv_A,4ldea,2ks9A,4ea3B,2ks9a,4ea3B,2ks9A,4ea3B |
HG0670 |
P35367 |
HRH1_HUMAN |
-0.45 |
0.66 ± 0.13 |
8.3 ± 4.5 |
3rzeA,3rzeA,3rzeA,3rzea,3rzeA,3rzeA,3rzea,3rze_A,3rzeA,3rzeA |
|
HG0671 |
Q8NHC5 |
O14AG_HUMAN |
0.36 |
0.76 ± 0.1 |
5.5 ± 3.5 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
HG0672 |
Q8NFJ6 |
PKR2_HUMAN |
-0.08 |
0.7 ± 0.12 |
6.9 ± 4.1 |
2ks9A,3vw7_A,2ks9A,2ks9a,2ks9A,2ks9A,4grv_A,2ks9a,2ks9A,2ks9A |
|
HG0673 |
P37288 |
V1AR_HUMAN |
-0.34 |
0.67 ± 0.13 |
7.7 ± 4.3 |
2ks9A,2rh1_A,2ks9A,2ks9a,2ks9A,2ks9A,2rh1_A,2ks9a,2ks9A,2ks9A |
HG0674 |
Q8IYL9 |
PSYR_HUMAN |
0.41 |
0.77 ± 0.1 |
5.6 ± 3.5 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
|
HG0675 |
Q6IFG1 |
O52E8_HUMAN |
-0.38 |
0.66 ± 0.13 |
7.1 ± 4.2 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,3vw7_A,4gpoa,3emlA1,3emlA1 |
HG0676 |
Q8NH86 |
Q8NH86_HUMAN |
0.24 |
0.74 ± 0.11 |
5.7 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0677 |
Q9UN27 |
Q9UN27_HUMAN |
-0.36 |
0.67 ± 0.13 |
7.2 ± 4.2 |
4mbsA,4mbsa,4mbsA,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1,4mbsA,4mbsA |
HG0678 |
Q8NH00 |
OR2T4_HUMAN |
-1.61 |
0.52 ± 0.15 |
9.99 ± 4.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0679 |
A0AUJ7 |
A0AUJ7_HUMAN |
0.04 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0680 |
P25929 |
NPY1R_HUMAN |
0.66 |
0.8 ± 0.09 |
5.3 ± 3.4 |
2ks9A,2ks9_A,2ks9A,2ks9a,2ks9A,2ks9A,3odu_A,2ks9a,2ks9A,2ks9A |
|
HG0681 |
Q8NGI9 |
OR5A2_HUMAN |
-0.19 |
0.69 ± 0.12 |
6.8 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0682 |
Q6LAJ3 |
Q6LAJ3_HUMAN |
-2.19 |
0.46 ± 0.15 |
9.99 ± 4.4 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0683 |
A4D2G5 |
A4D2G5_HUMAN |
-0.1 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
HG0684 |
Q8NGS2 |
OR1J2_HUMAN |
0.07 |
0.72 ± 0.11 |
6.1 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0685 |
Q6IFG6 |
Q6IFG6_HUMAN |
-0.46 |
0.65 ± 0.13 |
7.4 ± 4.2 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
HG0686 |
Q8NGX9 |
OR6P1_HUMAN |
-0.28 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0687 |
P0C617 |
O5AL1_HUMAN |
-0.55 |
0.64 ± 0.13 |
7.6 ± 4.3 |
4iaqA1,4grv_A,3emlA1,1l9ha,3emlA1,1gzmA,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0688 |
Q8NGL4 |
OR5DD_HUMAN |
-0.26 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0689 |
A4D2G3 |
O2A25_HUMAN |
0.08 |
0.72 ± 0.11 |
6.1 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0690 |
Q96R45 |
OR2A7_HUMAN |
-0.02 |
0.71 ± 0.12 |
6.3 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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