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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 11 12 13 14 15 16 17 18 19 20 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0450 |
A2RRF6 |
A2RRF6_HUMAN |
-0.2 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
|
HG0451 |
O43194 |
GPR39_HUMAN |
-0.99 |
0.59 ± 0.14 |
9.4 ± 4.6 |
2ks9A,2ks9A,4grv_A,2ks9a,2ks9A,2ks9a,4grvA1,2ks9A,4grv_A,2ks9A |
HG0452 |
Q6IEZ7 |
OR2T5_HUMAN |
-0.38 |
0.66 ± 0.13 |
7.1 ± 4.2 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0453 |
Q8NGL7 |
OR4P4_HUMAN |
-0.41 |
0.66 ± 0.13 |
7.2 ± 4.2 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0454 |
Q76L88 |
Q76L88_HUMAN |
0.42 |
0.77 ± 0.1 |
5.4 ± 3.5 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,3vw7A1,2rh1_A,4mbsa,3vw7A,4mbsA1 |
|
HG0455 |
B7ZLG5 |
B7ZLG5_HUMAN |
0.26 |
0.75 ± 0.1 |
6 ± 3.7 |
2z73A,1u19_A,2ks9A,1l9ha,1l9ha,1gzmA,1u19_A,1l9ha,2ziyA,2ks9A |
HG0456 |
Q8IXE2 |
Q8IXE2_HUMAN |
-0.33 |
0.67 ± 0.13 |
7.1 ± 4.2 |
4mbsA1,2rh1_A,4ea3B2,4mbsa,4mbsA1,2lnlA,2rh1_A,4ea3a,4ea3B,4mbsA1 |
|
HG0457 |
Q6NWQ8 |
Q6NWQ8_HUMAN |
0.1 |
0.73 ± 0.11 |
6.2 ± 3.8 |
4mbsA1,3vw7_A,2lnlA,4mbsa,4mbsA1,4mbsA1,2rh1_A,2ks9a,4mbsA,4mbsA1 |
HG0458 |
Q8NGG2 |
OR5T2_HUMAN |
-2.04 |
0.47 ± 0.15 |
9.99 ± 4.5 |
4iaqA1,3vw7_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0459 |
O60431 |
OR1I1_HUMAN |
-0.71 |
0.62 ± 0.14 |
8.1 ± 4.4 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0460 |
P41231 |
P2RY2_HUMAN |
0.15 |
0.73 ± 0.11 |
6.4 ± 3.9 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,2rh1_A,4mbsa,3vw7A,4mbsA1 |
|
HG0461 |
Q8NH70 |
O4A16_HUMAN |
-0.4 |
0.66 ± 0.13 |
7.3 ± 4.2 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0462 |
Q8NHB8 |
OR5K2_HUMAN |
0.11 |
0.73 ± 0.11 |
6.1 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0463 |
Q8NGV7 |
OR5H2_HUMAN |
-0.37 |
0.67 ± 0.13 |
7.1 ± 4.2 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0464 |
Q17R53 |
Q17R53_HUMAN |
-0.21 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
|
HG0465 |
Q86SI8 |
Q86SI8_HUMAN |
-0.72 |
0.62 ± 0.14 |
7.9 ± 4.4 |
4iaqA1,3uon_A,3emlA1,3emla,3emlA1,2vt4A,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0466 |
Q8NGS5 |
O13C4_HUMAN |
-0.05 |
0.71 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,1gzmA,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0467 |
Q506J9 |
Q506J9_HUMAN |
-2.28 |
0.45 ± 0.14 |
9.99 ± 4.3 |
3sn6R2,3sn6R,3pbl_A,3sn6R,2ks9A,4ldea,3vg9a,4ea3B,4iaqA1,4iaqA1 |
HG0468 |
O00590 |
ACKR2_HUMAN |
-2.01 |
0.47 ± 0.15 |
9.99 ± 4.5 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0469 |
Q15722 |
LT4R1_HUMAN |
-0.49 |
0.65 ± 0.13 |
7.6 ± 4.3 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
HG0470 |
Q8NGH5 |
O56A1_HUMAN |
-0.36 |
0.67 ± 0.13 |
7.1 ± 4.2 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
|
HG0471 |
Q8NHB1 |
OR2V1_HUMAN |
0.28 |
0.75 ± 0.1 |
5.7 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0472 |
Q9HBW0 |
LPAR2_HUMAN |
0.88 |
0.83 ± 0.08 |
4.7 ± 3.1 |
2ks9A,3v2y_A,2ks9A,2ks9a,1l9ha,3pblA1,3v2y_A,2ks9a,3emlA,2ks9A |
|
HG0473 |
Q8NGY1 |
O10Z1_HUMAN |
0.13 |
0.73 ± 0.11 |
6 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0474 |
Q6IEX5 |
Q6IEX5_HUMAN |
0.76 |
0.82 ± 0.09 |
4.6 ± 3 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0475 |
O15218 |
GP182_HUMAN |
-2.13 |
0.46 ± 0.15 |
9.99 ± 4.4 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
HG0476 |
Q6IEW6 |
Q6IEW6_HUMAN |
-0.01 |
0.71 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0477 |
B9EIN0 |
B9EIN0_HUMAN |
0.7 |
0.81 ± 0.09 |
4.7 ± 3.1 |
4iaqA1,2rh1_A,3emlA1,1l9ha,3emlA1,1gzmA,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0478 |
P21918 |
DRD5_HUMAN |
-2.08 |
0.47 ± 0.15 |
9.99 ± 4.4 |
3sn6R,2rh1_A,2ks9A,3zpqa,4ib4A,3sn6R2,2rh1_A,3zpqa,3sn6R,2ks9A |
|
HG0479 |
Q8NGF2 |
Q8NGF2_HUMAN |
0.49 |
0.78 ± 0.1 |
5.2 ± 3.3 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0480 |
P24530 |
EDNRB_HUMAN |
-0.73 |
0.62 ± 0.14 |
8.7 ± 4.5 |
4ea3B,2ks9A,4ea3B,3odu_A,4ea3B,2ks9A,2ks9a,2ks9A,4ea3B2,2rh1_A |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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