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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 1 2 3 4 5 6 7 8 9 10 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0210 |
Q6ZMI9 |
Q6ZMI9_HUMAN |
-2.31 |
0.44 ± 0.14 |
9.99 ± 4.2 |
4k5yA2,4l6r_A,4l6rA,4l6ra,4l6rA,4l6ra,4l6rA2,4l6rA,4k5y_A,4dlqA2 |
|
HG0211 |
Q8NHC8 |
OR2T6_HUMAN |
-0.03 |
0.71 ± 0.12 |
6.3 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0212 |
A6NCV1 |
O6C74_HUMAN |
0.28 |
0.75 ± 0.1 |
5.7 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0213 |
Q8NGS9 |
O13C2_HUMAN |
-0.05 |
0.71 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3sn6R2,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0214 |
Q8NGC3 |
O10G2_HUMAN |
-0.23 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0215 |
P25103 |
NK1R_HUMAN |
-2.22 |
0.45 ± 0.15 |
9.99 ± 4.4 |
4mbsA1,3odu_A,4mbsA1,4ea3a,1l9ha,4djhA1,2rh1_A,4ea3a,4ea3B,4mbsA1 |
HG0216 |
Q6FH34 |
Q6FH34_HUMAN |
-2.3 |
0.44 ± 0.14 |
9.99 ± 4.3 |
3sn6R,2rh1_A,3sn6R2,3zpqa,4ib4A,4ib4A,2rh1_A,3zpqa,3sn6R,3sn6R2 |
|
HG0217 |
P47887 |
OR1E2_HUMAN |
-0.41 |
0.66 ± 0.13 |
7.2 ± 4.2 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0218 |
Q8NGI8 |
O5AN1_HUMAN |
0.11 |
0.73 ± 0.11 |
6 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0219 |
A6NFC9 |
OR2W5_HUMAN |
-0.33 |
0.67 ± 0.13 |
7.1 ± 4.1 |
3uonA1,3uon_A,3emlA1,3emla,3emlA1,3uonA1,3uon_A,2ydoa,3emlA1,3emlA1 |
HG0220 |
Q9UHM6 |
OPN4_HUMAN |
-1.83 |
0.49 ± 0.15 |
9.99 ± 4.5 |
2z73A,2z73_A,2ziyA,2z73a,2ziyA,2z73A,2rh1_A,3ayma,2ziyA,2ziyA |
|
HG0221 |
O95047 |
OR2A4_HUMAN |
-0.21 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
HG0222 |
Q96R54 |
O14A2_HUMAN |
0.3 |
0.75 ± 0.1 |
5.7 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0223 |
Q8NGQ5 |
OR9Q1_HUMAN |
0.04 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0224 |
Q8N0Y3 |
OR4N4_HUMAN |
-0.26 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0225 |
Q3L3Q6 |
Q3L3Q6_HUMAN |
-1.03 |
0.58 ± 0.14 |
8.9 ± 4.6 |
4mbsA,4mbsA,4mbsa,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1,4mbsA1,4mbsA |
HG0226 |
Q8NGR2 |
OR1L6_HUMAN |
-1.73 |
0.5 ± 0.15 |
9.99 ± 4.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,3sn6r,3emlA1,3emlA1 |
|
HG0227 |
Q6IFI8 |
Q6IFI8_HUMAN |
0.23 |
0.74 ± 0.11 |
5.8 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0228 |
Q6IF40 |
Q6IF40_HUMAN |
-0.03 |
0.71 ± 0.12 |
6.3 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0229 |
P59537 |
T2R43_HUMAN |
-0.54 |
0.64 ± 0.13 |
7.4 ± 4.3 |
4djhA1,3rze_A,4djhA1,1l9ha,3a6pA1,1gzmA,3eml_A,4ea3a,3vw7A,4djhA1 |
HG0230 |
Q548M6 |
Q548M6_HUMAN |
-0.61 |
0.64 ± 0.13 |
8.4 ± 4.5 |
4iaqA,3uon_A,4iaqA,4iaqa,4ib4A,4ib4A,3uon_A,4iaqa,3uonA,4iaqA |
|
HG0231 |
Q8NH84 |
Q8NH84_HUMAN |
0.09 |
0.73 ± 0.11 |
6.1 ± 3.7 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0232 |
Q8IXE1 |
OR4N5_HUMAN |
-0.17 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0233 |
P25090 |
FPR2_HUMAN |
-0.33 |
0.67 ± 0.13 |
7.3 ± 4.2 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,4grv_A,4mbsa,4mbsA,4mbsA1 |
HG0234 |
Q9ULW2 |
FZD10_HUMAN |
-2.04 |
0.47 ± 0.15 |
9.99 ± 4.3 |
4jkvA,4jkv_A,4jkvA,4jkva,4jkvA,4jkvA,4jkv_A,4jkva,4jkvA,4jkvA |
|
HG0235 |
Q9UBJ7 |
Q9UBJ7_HUMAN |
-0.44 |
0.66 ± 0.13 |
7.4 ± 4.3 |
4mbsA,4mbsa,4mbsA,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1,4mbsA,4mbsA |
HG0236 |
Q15614 |
OR8G2_HUMAN |
-0.03 |
0.71 ± 0.12 |
6.3 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0237 |
Q9NZH0 |
GPC5B_HUMAN |
-2.78 |
0.4 ± 0.13 |
9.99 ± 4 |
4jkvA2,2e4u_A,4l8tA,4j5mA,4l6r_A,3wb8A,4l6rA,2e4u_A,4l6r_A,4iu8A |
HG0238 |
Q5VX04 |
Q5VX04_HUMAN |
-2.41 |
0.43 ± 0.14 |
9.99 ± 4.2 |
4ib4A,2rh1_A,4iaqA1,3zpqa,4ib4A,4ib4A,2rh1_A,3zpqa,3sn6R,4iaqA1 |
|
HG0239 |
Q8NG79 |
Q8NG79_HUMAN |
0.36 |
0.76 ± 0.1 |
5.5 ± 3.5 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0240 |
A6NND4 |
O2AT4_HUMAN |
-0.21 |
0.69 ± 0.12 |
6.8 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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