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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 1 2 3 4 5 6 7 8 9 10 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0090 |
Q9NYW2 |
TA2R8_HUMAN |
-0.15 |
0.69 ± 0.12 |
6.6 ± 4 |
4mbsA1,3odu_A,4djhA1,3vg9a,3rzeA1,2z73A,3rze_A,2ks9a,2ks9A,4djhA1 |
|
HG0091 |
P49685 |
GPR15_HUMAN |
0.19 |
0.74 ± 0.11 |
6.2 ± 3.8 |
4mbsA1,4grv_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,4grv_A,4mbsa,4mbsA,4mbsA1 |
HG0092 |
Q8NGX8 |
OR6Y1_HUMAN |
-0.23 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0093 |
Q4VBL8 |
Q4VBL8_HUMAN |
-0.25 |
0.68 ± 0.12 |
7.4 ± 4.2 |
2ks9A,2ks9_A,2ks9A,2ks9a,2ks9A,2ks9A,2ks9_A,2ks9a,2ks9A,2ks9A |
HG0094 |
Q8NGZ0 |
O2AJ1_HUMAN |
0.17 |
0.74 ± 0.11 |
6 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0095 |
Q8NGS3 |
OR1J1_HUMAN |
-0.12 |
0.7 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0096 |
P32239 |
GASR_HUMAN |
-1.28 |
0.56 ± 0.15 |
9.99 ± 4.6 |
4ib4A,3odu_A,2ks9A,3zpqa,2rh1A1,3uonA1,2rh1_A,3zpqa,2ks9A,2ks9A |
|
HG0097 |
Q8NGH3 |
OR2D3_HUMAN |
-0.63 |
0.63 ± 0.13 |
7.8 ± 4.4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0098 |
P41145 |
OPRK_HUMAN |
-2.13 |
0.46 ± 0.15 |
9.99 ± 4.5 |
4djha,4djhA,4djhA,4djhA1,4djhA1,4djhA1,4djha,4djhA,4djhA1,4djhA |
|
HG0099 |
Q502V9 |
Q502V9_HUMAN |
0.01 |
0.71 ± 0.11 |
6.7 ± 4 |
4mbsA1,2rh1_A,4ea3B,4ea3a,4mbsA1,4djhA1,3vw7_A,2ks9a,4ea3B,4ea3B2 |
HG0100 |
Q86YF2 |
Q86YF2_HUMAN |
0.02 |
0.72 ± 0.11 |
6.7 ± 4 |
4mbsA1,4dkl_A,2ks9A,2ks9a,4mbsA1,4ea3B2,2rh1_A,4ea3a,4ea3B,2ks9A |
|
HG0101 |
P47900 |
P2RY1_HUMAN |
-1.13 |
0.57 ± 0.14 |
9.2 ± 4.6 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,2rh1_A,4mbsa,3vw7A,4mbsA1 |
HG0102 |
Q6UXT6 |
Q6UXT6_HUMAN |
0.29 |
0.75 ± 0.1 |
5.6 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0103 |
Q8NGR6 |
OR1B1_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0104 |
Q8NGD3 |
OR4K5_HUMAN |
-0.23 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0105 |
Q15612 |
OR1Q1_HUMAN |
0.02 |
0.72 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0106 |
P20309 |
ACM3_HUMAN |
-2.92 |
0.38 ± 0.13 |
9.99 ± 3.5 |
4daja,4daja,3uonA,3uon_A,3uonA,3uonA,3uonA,3uonA,3uona,3uonA |
|
HG0107 |
Q15620 |
OR8B8_HUMAN |
0 |
0.71 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0108 |
Q8TDT2 |
GP152_HUMAN |
-2.7 |
0.4 ± 0.14 |
9.99 ± 3.9 |
4mbsA1,3vw7A,2z73_A,4mbsA1,4ea3a,4mbsA1,4mbsA1,2z73_A,4mbsa,4mbsA1 |
|
HG0109 |
P21730 |
C5AR1_HUMAN |
-1.36 |
0.55 ± 0.15 |
9.6 ± 4.6 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,2rh1_A,4mbsa,4mbsA,4mbsA1 |
HG0110 |
P35348 |
ADA1A_HUMAN |
-2.82 |
0.39 ± 0.13 |
9.99 ± 3.8 |
4ib4A,3uon_A,3sn6R2,3zpqa,4ib4A,4iaqA,2rh1_A,3zpqa,2rh1A,4iaqA1 |
|
HG0111 |
P47872 |
SCTR_HUMAN |
-0.4 |
0.66 ± 0.13 |
7.9 ± 4.4 |
4l6rA,4l6r_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA |
HG0112 |
Q8NGQ1 |
OR9G4_HUMAN |
-0.54 |
0.64 ± 0.13 |
7.6 ± 4.3 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0113 |
Q8NGY4 |
Q8NGY4_HUMAN |
-0.14 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,3vw7_A,3emlA1,2ydoa,3emlA1,3v2wA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
HG0114 |
Q8NG77 |
O2T12_HUMAN |
0.17 |
0.74 ± 0.11 |
6 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0115 |
Q9H2C6 |
Q9H2C6_HUMAN |
0.45 |
0.77 ± 0.1 |
5.2 ± 3.3 |
3pblA1,2rh1_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0116 |
Q6UR97 |
Q6UR97_HUMAN |
-0.27 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3odu_A,3emlA1,2ydoa,2rh1A1,4iaqA1,2rh1_A,4eiya,3sn6R,3emlA1 |
|
HG0117 |
Q502V0 |
Q502V0_HUMAN |
-0.13 |
0.7 ± 0.12 |
6.7 ± 4 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
HG0118 |
P48039 |
MTR1A_HUMAN |
1.41 |
0.91 ± 0.06 |
3.6 ± 2.5 |
2ks9A,2rh1_A,2ks9A,2ks9a,2ks9A,3rzeA1,2rh1_A,2ks9a,2ks9A,2ks9A |
|
HG0119 |
Q147X8 |
Q147X8_HUMAN |
-0.41 |
0.66 ± 0.13 |
7.9 ± 4.4 |
2ks9A,2z73_A,2ks9A,2ks9a,1l9ha,3pblA1,4grv_A,2ks9a,2ks9A,2ks9A |
HG0120 |
B3SXS7 |
B3SXS7_HUMAN |
0.95 |
0.84 ± 0.08 |
4.7 ± 3.1 |
4k5yA2,4l6rA,4k5y_A,4l6ra,4l6rA,4l6ra,4l6rA2,4l6rA,4k5y_A,4l6rA |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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