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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 31 32 33 34 35 36 37 38 39 40 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0960 |
Q8NGZ5 |
OR2G2_HUMAN |
-0.27 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0961 |
B2KIU2 |
B2KIU2_HUMAN |
-0.99 |
0.59 ± 0.14 |
8.8 ± 4.6 |
4mbsA,4mbs_A,4mbsA,4mbs_A,4mbsa,4mbsA,4mbsA,4mbsa,4mbsA1,4mbsA1 |
HG0962 |
P34981 |
TRFR_HUMAN |
-0.21 |
0.69 ± 0.12 |
7.3 ± 4.2 |
2ks9A,4mbs_A,2ks9A,2ycya,2ks9A,2vt4A,2rh1_A,3zpqa,2ks9A,2ks9A |
|
HG0963 |
A4D1U0 |
A4D1U0_HUMAN |
-0.04 |
0.71 ± 0.12 |
6.3 ± 3.8 |
4mbsA1,4mbs_A,4djhA1,2ks9a,3rzeA1,2z73A,4grv_A,2ks9a,3vw7A,3uonA1 |
HG0964 |
Q86SF4 |
Q86SF4_HUMAN |
-0.41 |
0.66 ± 0.13 |
7.2 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0965 |
D2CGC9 |
D2CGC9_HUMAN |
-0.83 |
0.61 ± 0.14 |
8.2 ± 4.5 |
4mbsA1,4mbs_A,4mbsA1,4ea3a,4mbsA1,4mbsA1,3odu_A,4mbsa,4ea3B,4mbsA1 |
HG0966 |
Q8NH10 |
OR8U1_HUMAN |
0.03 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0967 |
Q9NYM4 |
GPR83_HUMAN |
-1.23 |
0.56 ± 0.15 |
9.8 ± 4.6 |
2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,2ks9A,4mbs_A,2ks9a,2ks9A,2ks9A |
HG0968 |
P50406 |
5HT6R_HUMAN |
-2.47 |
0.43 ± 0.14 |
9.99 ± 4.2 |
3sn6R,4mbs_A,3sn6R2,3zpqa,4ib4A,4iaqA,2rh1_A,3zpqa,3sn6R,3sn6R2 |
|
HG0969 |
O43869 |
OR2T1_HUMAN |
-1.91 |
0.49 ± 0.15 |
9.99 ± 4.6 |
4ldea,4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1 |
HG0970 |
Q8NGE3 |
O10P1_HUMAN |
-0.14 |
0.7 ± 0.12 |
6.6 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
|
HG0971 |
Q86UG9 |
Q86UG9_HUMAN |
-1.24 |
0.56 ± 0.15 |
9.1 ± 4.6 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0972 |
Q96RD1 |
OR6C1_HUMAN |
0.22 |
0.74 ± 0.11 |
5.8 ± 3.6 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0973 |
Q8NG78 |
OR8G5_HUMAN |
-0.26 |
0.68 ± 0.12 |
6.8 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0974 |
Q8WY00 |
Q8WY00_HUMAN |
-1.7 |
0.51 ± 0.15 |
9.99 ± 4.6 |
4iaqA1,4mbs_A,3uonA,3zpqa,4iaqA,4iaqA,3uon_A,3zpqa,3uonA,3sn6R2 |
|
HG0975 |
Q8NGG5 |
OR8K1_HUMAN |
-0.36 |
0.67 ± 0.13 |
7.1 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0976 |
Q13639 |
5HT4R_HUMAN |
-1.09 |
0.58 ± 0.14 |
9.2 ± 4.6 |
3sn6R2,4mbs_A,3sn6R2,3zpqa,4iaqA1,4iaqA1,2rh1_A,3zpqa,3sn6R,3sn6R2 |
|
HG0977 |
Q8NGC5 |
OR6J1_HUMAN |
-0.6 |
0.64 ± 0.13 |
7.8 ± 4.4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0978 |
Q8NGP0 |
OR4CD_HUMAN |
-0.35 |
0.67 ± 0.13 |
7 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0979 |
Q9UQS0 |
Q9UQS0_HUMAN |
1.31 |
0.89 ± 0.06 |
3.5 ± 2.4 |
2z73A,4mbs_A,2ks9A,1l9ha,1l9ha,1gzmA,1u19_A,1l9ha,2ziyA,3pblA1 |
HG0980 |
Q6UR93 |
Q6UR93_HUMAN |
-0.49 |
0.65 ± 0.13 |
7.4 ± 4.2 |
4iaqA1,4mbs_A,4iaqA1,3vg9a,2rh1A1,4iaqA1,2rh1_A,3qaka,3sn6R,4iaqA1 |
|
HG0981 |
Q8NGT7 |
O2A12_HUMAN |
-0.16 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0982 |
Q9GZQ4 |
NMUR2_HUMAN |
-0.31 |
0.67 ± 0.12 |
7.6 ± 4.3 |
2ks9A,2ks9A,4mbs_A,2ks9a,2ks9A,2ks9a,4grvA1,2ks9A,4grv_A,2ks9A |
|
HG0983 |
B0M0K0 |
B0M0K0_HUMAN |
-1.21 |
0.56 ± 0.15 |
9.3 ± 4.6 |
4mbsA1,4mbs_A,4mbsA1,4ea3a,4mbsA1,4mbsA1,3vw7_A,4ea3a,3vw7A,4mbsA1 |
HG0984 |
Q8NGZ6 |
OR6F1_HUMAN |
-0.16 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0985 |
P21452 |
NK2R_HUMAN |
0.2 |
0.74 ± 0.11 |
6.4 ± 3.9 |
2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,2ks9A,2ks9_A,2ks9a,2ks9A,2ks9A |
HG0986 |
Q86SM8 |
MRGRE_HUMAN |
0 |
0.71 ± 0.11 |
6.3 ± 3.8 |
4mbsA1,4mbs_A,4ea3B,4mbsa,4mbsA1,4djhA1,2rh1_A,4ea3a,4ea3B,4djhA1 |
|
HG0987 |
P58173 |
OR2B6_HUMAN |
-0.14 |
0.7 ± 0.12 |
6.6 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0988 |
Q5JRS4 |
O10J3_HUMAN |
-0.99 |
0.59 ± 0.14 |
8.6 ± 4.5 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,2z73A,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0989 |
Q8NH76 |
O56B4_HUMAN |
-0.47 |
0.65 ± 0.13 |
7.4 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3rzeA1,4grv_A,4gpoa,3emlA1,3emlA1 |
HG0990 |
B5B0C2 |
B5B0C2_HUMAN |
0.39 |
0.77 ± 0.1 |
5.6 ± 3.5 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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