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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 31 32 33 34 35 36 37 38 39 40 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0900 |
B0EX01 |
B0EX01_HUMAN |
-1.13 |
0.57 ± 0.14 |
9.1 ± 4.6 |
4mbsA,4mbs_A,4mbsA,4mbs_A,4mbsa,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1 |
|
HG0901 |
Q6DWJ6 |
GP139_HUMAN |
0.48 |
0.78 ± 0.1 |
5.5 ± 3.5 |
4mbsA1,4mbs_A,2ks9A,2ks9a,4mbsA,4ea3B2,4grv_A,2ks9a,2ks9A,2ks9A |
HG0902 |
D2CFK4 |
D2CFK4_HUMAN |
-0.09 |
0.7 ± 0.12 |
6.2 ± 3.8 |
4ea3B2,4mbs_A,4ea3B2,4mbsa,4mbsA,4mbsA1,4mbs_A,4mbsa,4ea3B,4mbsA1 |
|
HG0903 |
Q8NH95 |
YI035_HUMAN |
-0.1 |
0.7 ± 0.12 |
6.6 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0904 |
Q8TDV5 |
GP119_HUMAN |
-0.62 |
0.63 ± 0.13 |
7.8 ± 4.4 |
3sn6R2,4mbs_A,3sn6R2,2ycya,4iaqA1,4iaqA1,2rh1_A,3zpqa,3emlA,3sn6R2 |
|
HG0905 |
B2RN74 |
O11HC_HUMAN |
-0.51 |
0.65 ± 0.13 |
7.5 ± 4.3 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0906 |
Q8NG83 |
OR2M3_HUMAN |
-0.04 |
0.71 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0907 |
Q9Y271 |
CLTR1_HUMAN |
-0.14 |
0.69 ± 0.12 |
6.7 ± 4 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3vw7_A,4mbsa,3vw7A,4mbsA1 |
HG0908 |
Q6L5J4 |
Q6L5J4_HUMAN |
-0.67 |
0.63 ± 0.14 |
8 ± 4.4 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,4mbs_A,4mbsa,4mbsA,4mbsA1 |
|
HG0909 |
Q5VT14 |
Q5VT14_HUMAN |
-0.44 |
0.66 ± 0.13 |
7.7 ± 4.3 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
HG0910 |
P29274 |
AA2AR_HUMAN |
-2.36 |
0.44 ± 0.14 |
9.99 ± 4.3 |
3vg9a,3vg9a,4eiy_A,4eiy_A,4eiya,4eiya,3uzaa,3uzaa,3pwha,3eml_A |
|
HG0911 |
Q8TDU1 |
Q8TDU1_HUMAN |
-2.57 |
0.42 ± 0.14 |
9.99 ± 4.2 |
2ks9A,2e4u_A,2ks9A,3ayma,4l8tA,2e4uA,2e4u_A,1l9ha,2e4xB,4l6rA2 |
HG0912 |
O95006 |
OR2F2_HUMAN |
-0.25 |
0.68 ± 0.12 |
6.8 ± 4.1 |
3pblA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0913 |
Q8NDV2 |
GPR26_HUMAN |
-0.49 |
0.65 ± 0.13 |
7.5 ± 4.3 |
3sn6R2,4mbs_A,3sn6R2,2ycya,2rh1A1,3sn6R2,2rh1_A,3zpqa,3sn6R,3sn6R2 |
HG0914 |
Q8WXZ9 |
Q8WXZ9_HUMAN |
-0.64 |
0.63 ± 0.13 |
8.1 ± 4.4 |
3sn6R2,4mbs_A,3sn6R2,4ldea,4ib4A,4ib4A,2rh1_A,3zpqa,4ib4A,3sn6R2 |
|
HG0915 |
Q9NQS5 |
GPR84_HUMAN |
0.21 |
0.74 ± 0.11 |
6.3 ± 3.9 |
4iaqA,4mbs_A,4iaqA,4iaqa,4iaqA,4ib4A,3uon_A,4iaqa,4ib4A,4iaqA |
HG0916 |
Q6NWS7 |
Q6NWS7_HUMAN |
-0.73 |
0.62 ± 0.14 |
8 ± 4.4 |
4iaqA1,4mbs_A,4iaqA1,3vg9a,4iaqA1,4iaqA1,2rh1_A,3zpqa,3emlA,4iaqA1 |
|
HG0917 |
O14842 |
FFAR1_HUMAN |
0.8 |
0.82 ± 0.08 |
4.5 ± 3 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3vw7_A,4mbsa,3vw7A,4mbsA1 |
HG0918 |
Q9H344 |
O51I2_HUMAN |
-0.12 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
|
HG0919 |
Q6ZN22 |
Q6ZN22_HUMAN |
-1.13 |
0.57 ± 0.14 |
9.5 ± 4.6 |
4l6rA2,4l6r_A,4l6rA,4l6ra,4l6rA,4l6ra,4l6rA2,4l6rA,4k5y_A,4l6rA |
HG0920 |
Q5CZ57 |
Q5CZ57_HUMAN |
-0.14 |
0.7 ± 0.12 |
7.2 ± 4.2 |
2ks9A,4mbs_A,2ks9A,2ks9a,1l9ha,1gzmA,4mbs_A,2ks9a,2ks9A,2ks9A |
|
HG0921 |
P32249 |
GP183_HUMAN |
-0.19 |
0.69 ± 0.12 |
7 ± 4.1 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,2rh1_A,4mbsa,3vw7A,4mbsA1 |
HG0922 |
B3SXS6 |
B3SXS6_HUMAN |
0.93 |
0.84 ± 0.08 |
4.8 ± 3.1 |
4k5yA2,4k5y_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA |
|
HG0923 |
Q8NG92 |
O13H1_HUMAN |
-0.04 |
0.71 ± 0.12 |
6.3 ± 3.9 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0924 |
Q8NH50 |
OR8K5_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0925 |
Q8NGI1 |
O56B2_HUMAN |
-0.25 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
HG0926 |
Q8NG80 |
OR2L5_HUMAN |
-0.38 |
0.66 ± 0.13 |
7.1 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0927 |
Q96RH0 |
Q96RH0_HUMAN |
0.24 |
0.75 ± 0.11 |
6.6 ± 4 |
3uon_A,3uonA,3uonA,3uonA,3uona,3uona,3uonA,3uonA,3uonA,3uon_A |
HG0928 |
Q6IF36 |
Q6IF36_HUMAN |
-0.59 |
0.64 ± 0.13 |
7.5 ± 4.3 |
4iaqA1,4mbs_A,3emlA1,3emla,3emlA1,3sn6R2,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0929 |
O95222 |
OR6A2_HUMAN |
-0.4 |
0.66 ± 0.13 |
7.2 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0930 |
Q6ZMP9 |
Q6ZMP9_HUMAN |
-0.3 |
0.67 ± 0.12 |
7.4 ± 4.3 |
4mbsA1,4ea3B,4dkl_A,4ea3B,4mbsA1,4ea3B,4mbsa,4ea3B,4mbsA1,4ea3B |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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