|
|
|
This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
|
Other GPCR-related resources
GPCR resources from other laboratories
|
[ HOME ]
[ SEARCH ]
[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 21 22 23 24 25 26 27 28 29 30 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0870 |
Q8NH81 |
O10G6_HUMAN |
-0.89 |
0.6 ± 0.14 |
8.4 ± 4.5 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0871 |
Q7Z601 |
GP142_HUMAN |
-1.44 |
0.54 ± 0.15 |
9.99 ± 4.6 |
4mbsA1,4ea3B,4mbs_A,4ea3B,2ks9A,4ea3B,2ks9a,4ea3B,4ea3B2,4ea3B |
HG0872 |
P59535 |
T2R40_HUMAN |
-0.47 |
0.65 ± 0.13 |
7.4 ± 4.2 |
4mbsA1,4mbs_A,4djhA1,2ks9a,3rzeA1,1gzmA,3uon_A,1l9ha,3vw7A,4djhA1 |
|
HG0873 |
Q96R72 |
OR4K3_HUMAN |
-0.3 |
0.67 ± 0.12 |
7 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,3v2wA1,3uon_A,2ydoa,3emlA1,3emlA1 |
HG0874 |
P07550 |
ADRB2_HUMAN |
-2.35 |
0.44 ± 0.14 |
9.99 ± 4.3 |
2r4r_A,2r4r_A,2rh1A,2rh1A,2rh1a,2rh1a,2rh1A,2rh1A,2rh1A,3pdsa |
|
HG0875 |
Q9H244 |
P2Y12_HUMAN |
-0.37 |
0.67 ± 0.13 |
7.3 ± 4.2 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,2rh1_A,4mbsa,3vw7A,4mbsA1 |
HG0876 |
Q86XI5 |
Q86XI5_HUMAN |
-2.03 |
0.47 ± 0.15 |
9.99 ± 4.4 |
4l6rA2,4l6r_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA2 |
|
HG0877 |
Q6W5P4 |
NPSR1_HUMAN |
-0.23 |
0.68 ± 0.12 |
7.1 ± 4.2 |
2ks9A,4mbs_A,2ks9A,2ks9a,1l9ha,2ks9A1,2rh1_A,2ks9a,2ks9A,2ks9A |
HG0878 |
Q9H207 |
O10A5_HUMAN |
-0.4 |
0.66 ± 0.13 |
7.2 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0879 |
P08913 |
ADA2A_HUMAN |
-0.26 |
0.68 ± 0.12 |
7.6 ± 4.3 |
4ib4A,4mbs_A,3uonA,3uona,4ib4A,4iaqA,3uon_A,4iaqa,2rh1A,3uonA |
HG0880 |
P59534 |
T2R39_HUMAN |
-0.84 |
0.61 ± 0.14 |
8.3 ± 4.5 |
4mbsA1,4mbs_A,4djhA1,1l9ha,3a6pA1,1gzmA,4mbs_A,1l9ha,2ks9A,4djhA1 |
|
HG0881 |
A5JUU3 |
A5JUU3_HUMAN |
-0.3 |
0.67 ± 0.12 |
7.1 ± 4.2 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,2rh1_A,4mbsa,3vw7A,4mbsA1 |
HG0882 |
Q13607 |
OR2F1_HUMAN |
-0.2 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0883 |
Q9HB89 |
NMUR1_HUMAN |
-0.59 |
0.64 ± 0.13 |
8.3 ± 4.5 |
2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,3pblA1,4grv_A,2ks9a,2ks9A,2ks9A |
HG0884 |
P25101 |
EDNRA_HUMAN |
-1.64 |
0.51 ± 0.15 |
9.99 ± 4.6 |
2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,4djhA1,4mbs_A,2ks9a,2ks9A,2ks9A |
|
HG0885 |
Q9HB45 |
Q9HB45_HUMAN |
0.49 |
0.78 ± 0.1 |
5.5 ± 3.5 |
4l6rA2,4l6r_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA2 |
HG0886 |
O76099 |
OR7C1_HUMAN |
-0.05 |
0.71 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0887 |
Q8NGH8 |
O56A4_HUMAN |
-0.32 |
0.67 ± 0.13 |
7 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
HG0888 |
A8CAI1 |
A8CAI1_HUMAN |
0.01 |
0.71 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0889 |
Q9UBT9 |
Q9UBT9_HUMAN |
-0.44 |
0.66 ± 0.13 |
7.4 ± 4.3 |
4mbs_A,4mbsA,4mbs_A,4mbsa,4mbsA,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1 |
HG0890 |
Q9UN23 |
Q9UN23_HUMAN |
-0.39 |
0.66 ± 0.13 |
7.3 ± 4.2 |
4mbsA,4mbs_A,4mbsA,4mbs_A,4mbsa,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1 |
|
HG0891 |
Q99463 |
NPY6R_HUMAN |
0.1 |
0.73 ± 0.11 |
5.9 ± 3.7 |
2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A1,2ks9A,3odu_A,2ks9a,2ks9A,2ks9A1 |
HG0892 |
Q86VZ1 |
P2RY8_HUMAN |
-0.38 |
0.66 ± 0.13 |
7.4 ± 4.3 |
4mbsA1,4mbs_A,4mbsA1,4ea3a,4mbsA1,3vw7A1,3vw7_A,4mbsa,3vw7A,4mbsA1 |
|
HG0893 |
Q9UN28 |
Q9UN28_HUMAN |
-0.39 |
0.66 ± 0.13 |
7.3 ± 4.2 |
4mbsA,4mbs_A,4mbsA,4mbs_A,4mbsa,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1 |
HG0894 |
Q8NGS7 |
O13C8_HUMAN |
-0.49 |
0.65 ± 0.13 |
7.4 ± 4.3 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0895 |
Q9GZK4 |
OR2H1_HUMAN |
0.39 |
0.77 ± 0.1 |
5.5 ± 3.5 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0896 |
B2RNZ0 |
B2RNZ0_HUMAN |
-0.03 |
0.71 ± 0.12 |
6.3 ± 3.9 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0897 |
Q6UR99 |
Q6UR99_HUMAN |
-0.61 |
0.64 ± 0.13 |
7.6 ± 4.3 |
4iaqA1,4mbs_A,3emlA1,3zpqa,2rh1A1,4iaqA1,2rh1_A,4eiya,3sn6R,3emlA1 |
HG0898 |
Q99679 |
GPR21_HUMAN |
0.58 |
0.79 ± 0.09 |
5.3 ± 3.4 |
3sn6R2,4mbs_A,4iaqA1,2z73a,2rh1A1,3rzeA1,3uon_A,3zpqa,3sn6R,4iaqA1 |
|
HG0899 |
Q96R84 |
OR1F2_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0900 |
B0EX01 |
B0EX01_HUMAN |
-1.13 |
0.57 ± 0.14 |
9.1 ± 4.6 |
4mbsA,4mbs_A,4mbsA,4mbs_A,4mbsa,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
|
|
|