This page contains 3D structural models (Version 2, built on March 2014) of all 1,062 putative G protein-coupled receptors (GPCRs) in the human genome generated by the GPCR-I-TASSER pipeline. In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to identify muliple structure templates by the LOMETS programs. When significant templates are identified, full-length models will be constructed by the I-TASSER based fragment assembly simulations, which are assisted by a GPCR and membrane specific force field and spatial restraints collected from mutagenesis experiments in GPCR-RD. If there is no significant template hit, an ab initio folding procedure is developed to assemble the seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment simulations. For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately which are then assembly by the I-TASSER approach. All the models are finally subjected to FG-MD for fragment-guided molecular dynamic simulation refinements.

Note:

  • For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments, secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor predictions.
  • The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions; users should bear cautions on using the loop and tail regions of the models which have usually low resolution. Users are encouraged to check the attached residue-specific quality (RSQ) prediction to assess the local structure errors.
  • All the models were constructed from the GPCR sequence alone. An attachment of addition ligand molecules may change the conformation of the structures.
  • All experimentally solved GPCR structures can be found at GPCR-EXP Database.
Other GPCR-related resources
GPCR resources from other laboratories


[ HOME ] [ SEARCH ]
[ GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[ GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[ GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]

Structure Models of GPCRs in Human Genome
<< < 21 22 23 24 25 26 27 28 29 30 > >>
Go to page

HG ID UniProt ID Entry Name C-score Estimated
TM-score
Estimated
RMSD
Top 10 Templates
HG0870 Q8NH81 O10G6_HUMAN -0.89 0.6 ± 0.14 8.4 ± 4.5 4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1
HG0871 Q7Z601 GP142_HUMAN -1.44 0.54 ± 0.15 9.99 ± 4.6 4mbsA1,4ea3B,4mbs_A,4ea3B,2ks9A,4ea3B,2ks9a,4ea3B,4ea3B2,4ea3B
HG0872 P59535 T2R40_HUMAN -0.47 0.65 ± 0.13 7.4 ± 4.2 4mbsA1,4mbs_A,4djhA1,2ks9a,3rzeA1,1gzmA,3uon_A,1l9ha,3vw7A,4djhA1
HG0873 Q96R72 OR4K3_HUMAN -0.3 0.67 ± 0.12 7 ± 4.1 4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,3v2wA1,3uon_A,2ydoa,3emlA1,3emlA1
HG0874 P07550 ADRB2_HUMAN -2.35 0.44 ± 0.14 9.99 ± 4.3 2r4r_A,2r4r_A,2rh1A,2rh1A,2rh1a,2rh1a,2rh1A,2rh1A,2rh1A,3pdsa
HG0875 Q9H244 P2Y12_HUMAN -0.37 0.67 ± 0.13 7.3 ± 4.2 4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,2rh1_A,4mbsa,3vw7A,4mbsA1
HG0876 Q86XI5 Q86XI5_HUMAN -2.03 0.47 ± 0.15 9.99 ± 4.4 4l6rA2,4l6r_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA2
HG0877 Q6W5P4 NPSR1_HUMAN -0.23 0.68 ± 0.12 7.1 ± 4.2 2ks9A,4mbs_A,2ks9A,2ks9a,1l9ha,2ks9A1,2rh1_A,2ks9a,2ks9A,2ks9A
HG0878 Q9H207 O10A5_HUMAN -0.4 0.66 ± 0.13 7.2 ± 4.2 4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1
HG0879 P08913 ADA2A_HUMAN -0.26 0.68 ± 0.12 7.6 ± 4.3 4ib4A,4mbs_A,3uonA,3uona,4ib4A,4iaqA,3uon_A,4iaqa,2rh1A,3uonA
HG0880 P59534 T2R39_HUMAN -0.84 0.61 ± 0.14 8.3 ± 4.5 4mbsA1,4mbs_A,4djhA1,1l9ha,3a6pA1,1gzmA,4mbs_A,1l9ha,2ks9A,4djhA1
HG0881 A5JUU3 A5JUU3_HUMAN -0.3 0.67 ± 0.12 7.1 ± 4.2 4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,2rh1_A,4mbsa,3vw7A,4mbsA1
HG0882 Q13607 OR2F1_HUMAN -0.2 0.69 ± 0.12 6.7 ± 4 4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1
HG0883 Q9HB89 NMUR1_HUMAN -0.59 0.64 ± 0.13 8.3 ± 4.5 2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,3pblA1,4grv_A,2ks9a,2ks9A,2ks9A
HG0884 P25101 EDNRA_HUMAN -1.64 0.51 ± 0.15 9.99 ± 4.6 2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,4djhA1,4mbs_A,2ks9a,2ks9A,2ks9A
HG0885 Q9HB45 Q9HB45_HUMAN 0.49 0.78 ± 0.1 5.5 ± 3.5 4l6rA2,4l6r_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA2
HG0886 O76099 OR7C1_HUMAN -0.05 0.71 ± 0.12 6.4 ± 3.9 4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1
HG0887 Q8NGH8 O56A4_HUMAN -0.32 0.67 ± 0.13 7 ± 4.1 4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1
HG0888 A8CAI1 A8CAI1_HUMAN 0.01 0.71 ± 0.11 6.3 ± 3.8 4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1
HG0889 Q9UBT9 Q9UBT9_HUMAN -0.44 0.66 ± 0.13 7.4 ± 4.3 4mbs_A,4mbsA,4mbs_A,4mbsa,4mbsA,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1
HG0890 Q9UN23 Q9UN23_HUMAN -0.39 0.66 ± 0.13 7.3 ± 4.2 4mbsA,4mbs_A,4mbsA,4mbs_A,4mbsa,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1
HG0891 Q99463 NPY6R_HUMAN 0.1 0.73 ± 0.11 5.9 ± 3.7 2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A1,2ks9A,3odu_A,2ks9a,2ks9A,2ks9A1
HG0892 Q86VZ1 P2RY8_HUMAN -0.38 0.66 ± 0.13 7.4 ± 4.3 4mbsA1,4mbs_A,4mbsA1,4ea3a,4mbsA1,3vw7A1,3vw7_A,4mbsa,3vw7A,4mbsA1
HG0893 Q9UN28 Q9UN28_HUMAN -0.39 0.66 ± 0.13 7.3 ± 4.2 4mbsA,4mbs_A,4mbsA,4mbs_A,4mbsa,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1
HG0894 Q8NGS7 O13C8_HUMAN -0.49 0.65 ± 0.13 7.4 ± 4.3 4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1
HG0895 Q9GZK4 OR2H1_HUMAN 0.39 0.77 ± 0.1 5.5 ± 3.5 4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1
HG0896 B2RNZ0 B2RNZ0_HUMAN -0.03 0.71 ± 0.12 6.3 ± 3.9 4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1
HG0897 Q6UR99 Q6UR99_HUMAN -0.61 0.64 ± 0.13 7.6 ± 4.3 4iaqA1,4mbs_A,3emlA1,3zpqa,2rh1A1,4iaqA1,2rh1_A,4eiya,3sn6R,3emlA1
HG0898 Q99679 GPR21_HUMAN 0.58 0.79 ± 0.09 5.3 ± 3.4 3sn6R2,4mbs_A,4iaqA1,2z73a,2rh1A1,3rzeA1,3uon_A,3zpqa,3sn6R,4iaqA1
HG0899 Q96R84 OR1F2_HUMAN -0.18 0.69 ± 0.12 6.7 ± 4 4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1
HG0900 B0EX01 B0EX01_HUMAN -1.13 0.57 ± 0.14 9.1 ± 4.6 4mbsA,4mbs_A,4mbsA,4mbs_A,4mbsa,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1


Reference:
    J Zhang, J Yang, R Jang, Y Zhang. Hybrid structure modeling of G protein-coupled receptors in the human genome. submitted (2015).
 


yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue Ann Arbor, MI 48109-2218