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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 1 2 3 4 5 6 7 8 9 10 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0060 |
Q8IVW0 |
Q8IVW0_HUMAN |
-1.53 |
0.53 ± 0.15 |
9.99 ± 4.6 |
3uonA,3uon_A,3uonA,3uona,4ib4A,3uonA,3uon_A,3uona,3uonA,3uonA |
|
HG0061 |
Q99680 |
GPR22_HUMAN |
-0.62 |
0.63 ± 0.13 |
8.4 ± 4.5 |
4iaqA,2rh1_A,2ks9A,3zpqa,4ib4A,4iaqA1,2rh1_A,3zpqa,2ks9A,2ks9A |
HG0062 |
Q8NHC1 |
Q8NHC1_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.8 ± 4.1 |
4iaqA1,4grv_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0063 |
Q5QIP0 |
Q5QIP0_HUMAN |
-1.1 |
0.58 ± 0.14 |
9 ± 4.6 |
4mbsA,4mbsa,4mbsA,4mbsA,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1,4mbsA1 |
HG0064 |
P32745 |
SSR3_HUMAN |
-1.21 |
0.56 ± 0.15 |
9.7 ± 4.6 |
4mbsA1,3odu_A,2ks9A,2ks9a,4mbsA1,4ea3B2,3odu_A,4ea3a,4djhA,2ks9A |
|
HG0065 |
A0N0N3 |
A0N0N3_HUMAN |
-0.96 |
0.59 ± 0.14 |
8.6 ± 4.5 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
HG0066 |
Q71V90 |
Q71V90_HUMAN |
0.49 |
0.78 ± 0.1 |
5 ± 3.2 |
4dkl_A,4dkl_A,4djhA,4djha,4djhA1,4djhA,4djha,4djhA1,4djhA1,4djhA1 |
|
HG0067 |
Q6IEV1 |
Q6IEV1_HUMAN |
0.02 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0068 |
Q9UGF6 |
OR5V1_HUMAN |
-0.19 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0069 |
Q8NGG9 |
Q8NGG9_HUMAN |
0.01 |
0.71 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0070 |
Q9Y2T5 |
GPR52_HUMAN |
-0.26 |
0.68 ± 0.12 |
7.2 ± 4.2 |
3sn6R2,3uon_A,4iaqA1,2z73a,2rh1A1,4iaqA1,3uon_A,3zpqa,3sn6R,4iaqA1 |
|
HG0071 |
Q8NH91 |
Q8NH91_HUMAN |
-0.21 |
0.69 ± 0.12 |
6.8 ± 4 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0072 |
Q5TZ20 |
OR2G6_HUMAN |
0.18 |
0.74 ± 0.11 |
5.9 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0073 |
Q6IEY1 |
OR4F3_HUMAN |
-0.11 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0074 |
B2RND4 |
B2RND4_HUMAN |
-1.58 |
0.52 ± 0.15 |
9.99 ± 4.6 |
4iaqA1,3odu_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0075 |
Q8N0Y5 |
OR8I2_HUMAN |
0.2 |
0.74 ± 0.11 |
5.8 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0076 |
Q8NGS1 |
OR1J4_HUMAN |
-0.21 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0077 |
Q9BXC1 |
GP174_HUMAN |
0.25 |
0.75 ± 0.11 |
5.9 ± 3.7 |
4mbsA1,4dkl_A,4mbsA1,4mbsa,4mbsA1,2lnlA,3odu_A,4mbsa,3vw7A,4mbsA1 |
HG0078 |
Q96AM1 |
MRGRF_HUMAN |
-0.75 |
0.62 ± 0.14 |
8.2 ± 4.4 |
4mbsA1,2rh1_A,4mbsA1,4mbsa,4mbsA1,2lnlA,2rh1_A,4ea3a,4ea3B,4ea3B2 |
|
HG0079 |
Q14968 |
Q14968_HUMAN |
-0.45 |
0.66 ± 0.13 |
7.3 ± 4.2 |
4ldea,4mbs_A,4ldea,4iaqA,4ea3B,2rh1A1,2ks9A,2ks9A,4mbs_A,2ks9A |
HG0080 |
P46089 |
GPR3_HUMAN |
-0.62 |
0.63 ± 0.13 |
7.8 ± 4.4 |
3sn6R2,4grv_A,4iaqA1,3vg9a,4iaqA1,4iaqA1,4grv_A,3zpqa,3emlA,4iaqA1 |
|
HG0081 |
A6NHG9 |
O5H14_HUMAN |
-0.08 |
0.7 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0082 |
P51685 |
CCR8_HUMAN |
-0.96 |
0.59 ± 0.14 |
8.7 ± 4.5 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0083 |
O00325 |
O00325_HUMAN |
0.34 |
0.76 ± 0.1 |
6.1 ± 3.8 |
2ks9A,2rh1_A,2ks9A,2ks9a,1l9ha,1gzmA,4grv_A,2ks9a,2ks9A,2ks9A |
HG0084 |
Q8NGA6 |
O10H5_HUMAN |
-0.19 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0085 |
Q6IF42 |
OR2A2_HUMAN |
-0.35 |
0.67 ± 0.13 |
7.1 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0086 |
Q8NGC9 |
O11H4_HUMAN |
-0.5 |
0.65 ± 0.13 |
7.5 ± 4.3 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0087 |
Q8WZ84 |
OR8D1_HUMAN |
-0.15 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0088 |
Q8NH02 |
O2T29_HUMAN |
-0.26 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0089 |
O60412 |
OR7C2_HUMAN |
-0.17 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0090 |
Q9NYW2 |
TA2R8_HUMAN |
-0.15 |
0.69 ± 0.12 |
6.6 ± 4 |
4mbsA1,3odu_A,4djhA1,3vg9a,3rzeA1,2z73A,3rze_A,2ks9a,2ks9A,4djhA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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