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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 21 22 23 24 25 26 27 28 29 30 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0810 |
O95918 |
OR2H2_HUMAN |
0.28 |
0.75 ± 0.1 |
5.7 ± 3.6 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0811 |
Q8NGN4 |
O10G9_HUMAN |
-0.07 |
0.7 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0812 |
Q9NPC1 |
LT4R2_HUMAN |
-0.48 |
0.65 ± 0.13 |
7.8 ± 4.4 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,4mbs_A,4mbsa,4ea3B,4mbsA1 |
|
HG0813 |
O43614 |
OX2R_HUMAN |
-0.57 |
0.64 ± 0.13 |
8.3 ± 4.5 |
2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,2ks9A,4mbs_A,2ks9a,2ks9A,2ks9A |
HG0814 |
Q8NH49 |
OR4X1_HUMAN |
-0.31 |
0.67 ± 0.13 |
6.9 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,2z73A,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0815 |
Q8NH06 |
OR1P1_HUMAN |
-0.4 |
0.66 ± 0.13 |
7.3 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0816 |
Q96LB1 |
MRGX2_HUMAN |
-0.83 |
0.61 ± 0.14 |
8.2 ± 4.5 |
4mbsA1,4mbs_A,4mbsA1,4ea3a,4mbsA1,4grvA1,2rh1_A,4ea3a,4ea3B,4mbsA1 |
|
HG0817 |
Q86SF1 |
Q86SF1_HUMAN |
-0.38 |
0.66 ± 0.13 |
7.1 ± 4.2 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0818 |
Q8NGM1 |
OR4CF_HUMAN |
-0.25 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,2z73A,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0819 |
Q8TDS7 |
MRGRD_HUMAN |
-0.56 |
0.64 ± 0.13 |
7.6 ± 4.3 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4djhA1,2rh1_A,4ea3a,4ea3B,4mbsA1 |
HG0820 |
Q6IF99 |
O10K2_HUMAN |
-0.01 |
0.71 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0821 |
Q8NGA0 |
OR7G1_HUMAN |
0.02 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0822 |
P58181 |
O10A3_HUMAN |
-0.15 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0823 |
A3KME5 |
A3KME5_HUMAN |
-0.22 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0824 |
Q6IEU7 |
OR5MA_HUMAN |
0.1 |
0.73 ± 0.11 |
6.1 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0825 |
A4FU14 |
A4FU14_HUMAN |
-0.36 |
0.67 ± 0.13 |
7 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0826 |
Q8NHA7 |
Q8NHA7_HUMAN |
0.22 |
0.74 ± 0.11 |
5.6 ± 3.5 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0827 |
Q8NGT9 |
OR2A1_HUMAN |
-0.14 |
0.7 ± 0.12 |
6.6 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0828 |
B9EIK5 |
B9EIK5_HUMAN |
-0.01 |
0.71 ± 0.11 |
6.3 ± 3.9 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0829 |
Q8NGZ3 |
O13G1_HUMAN |
0.24 |
0.75 ± 0.11 |
5.7 ± 3.6 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0830 |
Q8NGE1 |
OR6C4_HUMAN |
0.18 |
0.74 ± 0.11 |
5.9 ± 3.7 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0831 |
Q8NFZ6 |
VN1R2_HUMAN |
-3 |
0.37 ± 0.13 |
9.99 ± 3.8 |
2ziya,2z73A,4k6jA,4mbs_A,4ea3B,4grvA1,3a6pA1,2z73A,4ea3B,2rh1_A |
HG0832 |
Q9BZJ8 |
GPR61_HUMAN |
-1.99 |
0.48 ± 0.15 |
9.99 ± 4.5 |
3sn6R2,4mbs_A,2ks9A,2ycya,4ib4A,4iaqA1,2rh1_A,3zpqa,3sn6R,2ks9A |
|
HG0833 |
P47804 |
RGR_HUMAN |
0.95 |
0.84 ± 0.08 |
4.2 ± 2.8 |
2z73A,4mbs_A,3uonA1,2z73a,1l9ha,1gzmA,2rh1_A,1l9ha,2ziyA,2z73A |
HG0834 |
Q86UG7 |
Q86UG7_HUMAN |
-1 |
0.59 ± 0.14 |
8.5 ± 4.5 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0835 |
P03999 |
OPSB_HUMAN |
1.24 |
0.88 ± 0.07 |
4 ± 2.7 |
1u19A,4mbs_A,2ks9A,1l9ha,1l9ha,1gzmA,2rh1_A,1l9ha,2ziyA,2ks9A |
HG0836 |
Q96RH1 |
Q96RH1_HUMAN |
-0.55 |
0.64 ± 0.13 |
8.3 ± 4.5 |
3uonA,3uon_A,3uonA,3uona,4ib4A,4ib4A,3uon_A,4iaqa,3uonA,3uonA |
|
HG0837 |
P59539 |
T2R45_HUMAN |
0.12 |
0.73 ± 0.11 |
5.9 ± 3.7 |
4djhA1,4mbs_A,4djhA1,3vg9a,3rzeA1,1gzmA,3odu_A,2ks9a,3vw7A,4djhA1 |
HG0838 |
O14804 |
TAAR5_HUMAN |
0.14 |
0.73 ± 0.11 |
6.1 ± 3.8 |
3sn6R2,4mbs_A,4iaqA1,2ycwa,2rh1A1,4iaqA1,2rh1_A,3zpqa,3sn6R,4iaqA1 |
|
HG0839 |
Q147U0 |
Q147U0_HUMAN |
0.05 |
0.72 ± 0.11 |
6.8 ± 4 |
2ks9A,4mbs_A,2ks9A,2ks9a,1l9ha,3pblA1,4mbs_A,2ks9a,2ks9A,2ks9A |
HG0840 |
Q8NGR4 |
OR5C1_HUMAN |
-0.17 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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