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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 21 22 23 24 25 26 27 28 29 30 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0720 |
P51681 |
CCR5_HUMAN |
-1.36 |
0.55 ± 0.15 |
9.6 ± 4.6 |
4mbsA,4mbsA,4mbsa,4mbsA,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1,4mbsA1 |
|
HG0721 |
Q969V1 |
MCHR2_HUMAN |
-0.22 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4mbsA1,2rh1_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4djhA,4mbsA1 |
HG0722 |
O95371 |
OR2C1_HUMAN |
0.28 |
0.75 ± 0.1 |
5.7 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0723 |
Q6NUP5 |
Q6NUP5_HUMAN |
-0.47 |
0.65 ± 0.13 |
7.6 ± 4.3 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3vw7_A,4mbsa,4mbsA,4mbsA1 |
HG0724 |
Q0VAB0 |
Q0VAB0_HUMAN |
-3.18 |
0.36 ± 0.12 |
9.99 ± 4 |
4iaqA1,3odu_A,4grvA,2ycya,1l9ha,1gzmA,4grv_A,2ks9a,4ea3B,3uonA1 |
|
HG0725 |
Q8NGA2 |
OR7A2_HUMAN |
-0.04 |
0.71 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0726 |
Q8NGM8 |
OR6M1_HUMAN |
-0.09 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0727 |
Q5NUL3 |
FFAR4_HUMAN |
0.18 |
0.74 ± 0.11 |
6.3 ± 3.9 |
4mbsA,2rh1_A,2ks9A,2ks9a,4mbsA,3sn6R2,3odu_A,2ks9a,2ks9A,2ks9A |
HG0728 |
A6NHA9 |
O4C46_HUMAN |
-0.17 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,4mbs_A,3emlA1,1l9ha,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0729 |
P58170 |
OR1D5_HUMAN |
-0.16 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0730 |
P47775 |
GPR12_HUMAN |
-0.38 |
0.66 ± 0.13 |
7.3 ± 4.2 |
4iaqA1,4mbs_A,4iaqA1,3vg9a,4iaqA1,4iaqA1,2rh1_A,3zpqa,3sn6R,4iaqA1 |
|
HG0731 |
Q15761 |
NPY5R_HUMAN |
-1.75 |
0.5 ± 0.15 |
9.99 ± 4.6 |
4mbsA,4mbs_A,4iaqA,4eiya,4ib4A,4djhA,2rh1_A,4iaqa,2ks9A,4iaqA |
HG0732 |
Q6URA0 |
Q6URA0_HUMAN |
-0.53 |
0.65 ± 0.13 |
7.5 ± 4.3 |
4iaqA1,4mbs_A,4iaqA1,3vg9a,2rh1A1,4iaqA1,2rh1_A,3zpqa,3sn6R,4iaqA1 |
|
HG0733 |
Q9Y5P1 |
O51B2_HUMAN |
-0.12 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
HG0734 |
P32241 |
VIPR1_HUMAN |
-0.94 |
0.6 ± 0.14 |
9.3 ± 4.6 |
4l6rA,4l6r_A,4l6rA,4l6ra,4l6rA,4l6rA2,4l6ra,4k5y_A,4l6rA,4l6rA |
|
HG0735 |
Q13324 |
CRFR2_HUMAN |
0.22 |
0.74 ± 0.11 |
6.4 ± 3.9 |
4k5yA2,4l6r_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA |
HG0736 |
Q53XZ3 |
Q53XZ3_HUMAN |
-0.65 |
0.63 ± 0.14 |
8.6 ± 4.5 |
3uonA,3uon_A,3uonA,3uona,4ib4A,3uonA,3uon_A,4iaqa,3uonA,3uonA |
|
HG0737 |
Q8NGA9 |
Q8NGA9_HUMAN |
-1.93 |
0.48 ± 0.15 |
9.99 ± 4.6 |
4k5yA2,4k5y_A,4l6rA,4l6ra,4jkvA,4l6rA2,4k5y_A,4l6ra,4l6rA,4k5yA2 |
HG0738 |
B5B0C6 |
B5B0C6_HUMAN |
-0.41 |
0.66 ± 0.13 |
7.2 ± 4.2 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,2lnlA,4grv_A,4ea3a,4ea3B,4mbsA1 |
|
HG0739 |
Q8NGI0 |
O52N2_HUMAN |
-0.23 |
0.68 ± 0.12 |
6.8 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0740 |
A6NIJ9 |
O6C70_HUMAN |
0.02 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0741 |
Q8NGU9 |
GP150_HUMAN |
-0.56 |
0.64 ± 0.13 |
8.3 ± 4.5 |
2ks9A,4mbs_A,2ks9A,2ks9a,2ks9A,2ks9A1,4mbs_A,2ks9a,2ks9A,2ks9A |
HG0742 |
Q8NGN7 |
O10D4_HUMAN |
-0.02 |
0.71 ± 0.12 |
6.2 ± 3.8 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0743 |
B9EIL7 |
B9EIL7_HUMAN |
-0.25 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0744 |
Q99527 |
GPER1_HUMAN |
-2.14 |
0.46 ± 0.15 |
9.99 ± 4.5 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0745 |
Q86YW1 |
Q86YW1_HUMAN |
-0.65 |
0.63 ± 0.13 |
7.7 ± 4.3 |
4iaqA1,4mbs_A,3emlA1,3zpqa,4iaqA1,4iaqA1,2rh1_A,3zpqa,3sn6R,3emlA1 |
HG0746 |
Q8NGG4 |
OR8H1_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0747 |
Q7L853 |
Q7L853_HUMAN |
-0.46 |
0.65 ± 0.13 |
7.4 ± 4.2 |
3v2wA,3v2wA,3v2y_A,3v2y_A,3v2wA,3v2wA1,3v2wA1,3v2wA1,4eiya,4eiya |
HG0748 |
Q8TDS4 |
HCAR2_HUMAN |
-0.88 |
0.6 ± 0.14 |
8.6 ± 4.5 |
4mbsA1,4mbs_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,4mbs_A,4mbsa,3vw7A,4mbsA1 |
|
HG0749 |
Q14D80 |
Q14D80_HUMAN |
0.14 |
0.73 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,4mbs_A,3sn6R2,3zpqa,4ib4A,4ib4A,2rh1_A,3zpqa,4ib4A,3sn6R2 |
HG0750 |
Q8NGC1 |
O11G2_HUMAN |
-1.72 |
0.51 ± 0.15 |
9.99 ± 4.6 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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