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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 21 22 23 24 25 26 27 28 29 30 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0690 |
Q96R45 |
OR2A7_HUMAN |
-0.02 |
0.71 ± 0.12 |
6.3 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
|
HG0691 |
P49019 |
HCAR3_HUMAN |
-0.42 |
0.66 ± 0.13 |
7.7 ± 4.3 |
4mbsA1,3vw7A,3odu_A,2ks9A,4mbsA1,2ks9A,4ea3a,2ks9a,4mbsA1,2ks9a |
HG0692 |
Q969N4 |
TAAR8_HUMAN |
0.3 |
0.75 ± 0.1 |
5.8 ± 3.6 |
3sn6R2,2rh1_A,3sn6R2,4ldea,4iaqA1,4iaqA1,2rh1_A,3zpqa,3sn6R,2rh1A1 |
|
HG0693 |
Q8NGF0 |
O52B6_HUMAN |
-1 |
0.59 ± 0.14 |
8.7 ± 4.5 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
HG0694 |
B9EH08 |
B9EH08_HUMAN |
-0.27 |
0.68 ± 0.12 |
6.8 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
|
HG0695 |
Q15391 |
P2Y14_HUMAN |
-0.29 |
0.68 ± 0.12 |
7.1 ± 4.1 |
4mbsA1,2rh1_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,2rh1_A,4mbsa,3vw7A,4mbsA1 |
HG0696 |
Q8NGS4 |
O13F1_HUMAN |
-0.12 |
0.7 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0697 |
Q8NGD0 |
OR4M1_HUMAN |
-0.31 |
0.67 ± 0.13 |
7 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0698 |
Q8NGQ6 |
OR9I1_HUMAN |
-0.08 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0699 |
Q8NGJ9 |
O51T1_HUMAN |
-0.41 |
0.66 ± 0.13 |
7.3 ± 4.2 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0700 |
P21731 |
TA2R_HUMAN |
0.37 |
0.76 ± 0.1 |
5.7 ± 3.6 |
4mbsA1,4grv_A,2ks9A,2ks9a,1l9ha,3sn6R2,4grv_A,4ea3a,2ks9A,4mbsA1 |
|
HG0701 |
Q8NGJ2 |
O52H1_HUMAN |
-0.67 |
0.63 ± 0.14 |
7.8 ± 4.4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
HG0702 |
Q63ZY2 |
Q63ZY2_HUMAN |
-1.96 |
0.48 ± 0.15 |
9.99 ± 4.5 |
4mbsA1,2ks9A,3odu_A,2ks9A,4mbsA1,2ks9A,4ea3a,2ks9A,4mbsA1,2ks9a |
|
HG0703 |
B9EIL8 |
B9EIL8_HUMAN |
-0.24 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0704 |
Q1JUM0 |
Q1JUM0_HUMAN |
-1.39 |
0.54 ± 0.15 |
9.5 ± 4.6 |
4iaqA1,3odu_A,3emlA1,2ydoa,2rh1A1,3sn6R2,2rh1_A,4eiya,3sn6R,3emlA1 |
|
HG0705 |
Q8NGR1 |
O13A1_HUMAN |
-0.99 |
0.59 ± 0.14 |
8.6 ± 4.5 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0706 |
Q8NH83 |
OR4A5_HUMAN |
-0.28 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0707 |
P41146 |
OPRX_HUMAN |
-0.58 |
0.64 ± 0.13 |
7.9 ± 4.4 |
4ea3_A,4ea3_A,4ea3a,4ea3a,4ea3B,4ea3B,4ea3B2,4ea3B2,4ea3B2,4ea3B |
HG0708 |
A6NH00 |
OR2T8_HUMAN |
0.03 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0709 |
P49683 |
PRLHR_HUMAN |
-0.35 |
0.67 ± 0.13 |
7.4 ± 4.3 |
2ks9A,3odu_A,2ks9A,2ks9a,2ks9A,2ks9A,3vw7_A,2ks9a,2ks9A,2ks9A |
HG0710 |
Q6ZMH0 |
Q6ZMH0_HUMAN |
-0.99 |
0.59 ± 0.14 |
9.3 ± 4.6 |
4k5yA2,4l6r_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA2 |
|
HG0711 |
Q6IFK7 |
Q6IFK7_HUMAN |
-1.97 |
0.48 ± 0.15 |
9.99 ± 4.6 |
4ldea,4iaqA1,3sn6r,3uon_A,4ea3B,3emlA1,3emlA1,3uonA1,4grv_A,4gpoa |
HG0712 |
P35408 |
PE2R4_HUMAN |
-2.62 |
0.41 ± 0.14 |
9.99 ± 4 |
2z73A,4grv_A,2ks9A,2ycya,4ib4A,2z73A,2rh1_A,3zpqa,2ks9A,2ks9A |
|
HG0713 |
Q8NH53 |
O52N1_HUMAN |
-0.17 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0714 |
Q16602 |
CALRL_HUMAN |
-2.19 |
0.46 ± 0.15 |
9.99 ± 4.3 |
4l6rA,4l6r_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA |
|
HG0715 |
Q969F8 |
KISSR_HUMAN |
-0.08 |
0.7 ± 0.12 |
7 ± 4.1 |
2ks9A,4dkl_A,2ks9A,2ks9a,2ks9A,4ea3B2,3odu_A,2ks9a,2ks9A,2ks9A |
HG0716 |
O00155 |
GPR25_HUMAN |
-0.87 |
0.6 ± 0.14 |
8.5 ± 4.5 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0717 |
Q8NGD2 |
OR4K2_HUMAN |
-0.19 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0718 |
Q8NGN2 |
O10S1_HUMAN |
-0.75 |
0.62 ± 0.14 |
8.1 ± 4.4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0719 |
Q8NH60 |
O52J3_HUMAN |
-0.22 |
0.68 ± 0.12 |
6.7 ± 4 |
3pblA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0720 |
P51681 |
CCR5_HUMAN |
-1.36 |
0.55 ± 0.15 |
9.6 ± 4.6 |
4mbsA,4mbsA,4mbsa,4mbsA,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1,4mbsA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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