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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 21 22 23 24 25 26 27 28 29 30 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0600 |
Q8NH03 |
OR2T3_HUMAN |
-0.3 |
0.68 ± 0.12 |
7 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0601 |
A6NKK0 |
OR5H1_HUMAN |
-0.08 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0602 |
Q8NGI6 |
OR4DA_HUMAN |
-0.13 |
0.7 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0603 |
P0C7T2 |
OR2T7_HUMAN |
0.18 |
0.74 ± 0.11 |
5.9 ± 3.7 |
4iaqA1,3vw7_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0604 |
O43898 |
O43898_HUMAN |
0.82 |
0.82 ± 0.08 |
5 ± 3.2 |
2ks9A,2rh1_A,2ks9A,2ks9a,2rh1A1,3sn6R2,2rh1_A,3zpqa,2ks9A,2ks9A |
|
HG0605 |
A0N0W9 |
A0N0W9_HUMAN |
0.21 |
0.74 ± 0.11 |
6 ± 3.7 |
4iaqA1,4grv_A,3emlA1,2ydoa,2rh1A1,4iaqA1,2rh1_A,4eiya,3sn6R,3emlA1 |
HG0606 |
A7E1X5 |
A7E1X5_HUMAN |
0.3 |
0.75 ± 0.1 |
5.6 ± 3.5 |
4djhA1,3odu_A,4djhA1,1l9ha,3rzeA1,2z73A,3uon_A,2ks9a,3vw7A,3uonA1 |
|
HG0607 |
Q8NH18 |
OR5J2_HUMAN |
-0.09 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0608 |
P47881 |
OR3A1_HUMAN |
0.02 |
0.72 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0609 |
P30953 |
OR1E1_HUMAN |
-0.1 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0610 |
Q49SQ1 |
GPR33_HUMAN |
0.04 |
0.72 ± 0.11 |
6.3 ± 3.9 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,2rh1_A,4mbsa,4mbsA,4mbsA1 |
|
HG0611 |
Q9UM77 |
Q9UM77_HUMAN |
-0.3 |
0.68 ± 0.12 |
6.7 ± 4 |
4iaqA1,3vw7_A,3emlA1,3emla,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0612 |
Q8NGI7 |
O10V1_HUMAN |
-0.28 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0613 |
Q3KNR3 |
Q3KNR3_HUMAN |
-0.08 |
0.7 ± 0.12 |
6.2 ± 3.8 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,2rh1_A,4mbsa,4mbsA,4mbsA1 |
HG0614 |
Q6XGY1 |
Q6XGY1_HUMAN |
1.13 |
0.87 ± 0.07 |
3.8 ± 2.6 |
2ks9A,2rh1_A,2ks9A,2ks9a,2ks9A,2ks9A,2rh1_A,2ks9a,2ks9A,2ks9A |
|
HG0615 |
B2R986 |
B2R986_HUMAN |
-0.25 |
0.68 ± 0.12 |
7 ± 4.1 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
HG0616 |
Q8TDV2 |
GP148_HUMAN |
-0.91 |
0.6 ± 0.14 |
8.5 ± 4.5 |
4iaqA1,3odu_A,3emlA1,1l9ha,4iaqA1,4iaqA1,3vw7_A,2ydoa,2ks9A,3emlA1 |
|
HG0617 |
Q8IXB0 |
Q8IXB0_HUMAN |
-0.06 |
0.71 ± 0.12 |
6.6 ± 4 |
4ea3_A,4ea3_A,4ea3a,4ea3a,4ea3B,4ea3B2,4ea3B,4ea3B2,4ea3B2,4ea3B |
HG0618 |
Q86SI3 |
Q86SI3_HUMAN |
-0.5 |
0.65 ± 0.13 |
7.4 ± 4.2 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0619 |
P49286 |
MTR1B_HUMAN |
0.77 |
0.82 ± 0.09 |
5 ± 3.2 |
2ks9A,2rh1_A,2ks9A,2ks9a,2ks9A,3rzeA1,2rh1_A,2ks9a,2ks9A,2ks9A |
HG0620 |
Q32VQ0 |
OR4FL_HUMAN |
0.62 |
0.8 ± 0.09 |
4.7 ± 3.1 |
3pblA1,3uon_A,3emlA1,1l9ha,3emlA1,2z73A,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0621 |
Q6FGM5 |
Q6FGM5_HUMAN |
-0.45 |
0.66 ± 0.13 |
7.6 ± 4.3 |
4ea3_A,4ea3_A,4ea3a,4ea3a,4ea3B,4ea3B2,4ea3B2,4ea3B,4ea3B,4ea3B2 |
HG0622 |
Q8NGY3 |
OR6K3_HUMAN |
-0.49 |
0.65 ± 0.13 |
7.5 ± 4.3 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0623 |
Q4KN04 |
Q4KN04_HUMAN |
-0.22 |
0.68 ± 0.12 |
6.7 ± 4 |
4djhA1,3rze_A,4djhA1,2z73a,3rzeA1,1gzmA,3rze_A,2ks9a,2ks9A,4djhA1 |
HG0624 |
Q8NGV0 |
OR2Y1_HUMAN |
0.25 |
0.75 ± 0.11 |
5.7 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
|
HG0625 |
Q8NGR5 |
OR1L4_HUMAN |
-0.35 |
0.67 ± 0.13 |
7 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0626 |
Q8NGC8 |
O11H7_HUMAN |
-0.17 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0627 |
Q86SI5 |
Q86SI5_HUMAN |
-0.68 |
0.63 ± 0.14 |
7.8 ± 4.4 |
4iaqA1,2rh1_A,3emlA1,3emla,3emlA1,2vt4A,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0628 |
Q8NH69 |
OR5W2_HUMAN |
0.16 |
0.73 ± 0.11 |
5.9 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0629 |
Q9UKL2 |
O52A1_HUMAN |
-0.14 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3rzeA1,4grv_A,4gpoa,3emlA1,3emlA1 |
HG0630 |
P59542 |
T2R19_HUMAN |
0.2 |
0.74 ± 0.11 |
5.8 ± 3.6 |
4djhA1,3odu_A,4djhA1,2z73a,3rzeA1,1gzmA,3odu_A,2ks9a,3vw7A,4djhA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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