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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 1 2 3 4 5 6 7 8 9 10 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0030 |
Q5CZ62 |
Q5CZ62_HUMAN |
-0.28 |
0.68 ± 0.12 |
7.6 ± 4.3 |
2ks9A,2rh1_A,2ks9A,2ks9a,1l9ha,1gzmA,4grv_A,2ks9a,2ks9A,2ks9A |
|
HG0031 |
P21462 |
FPR1_HUMAN |
-0.37 |
0.67 ± 0.13 |
7.3 ± 4.2 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3vw7_A,4mbsa,4mbsA,4mbsA1 |
HG0032 |
P0C628 |
O5AC1_HUMAN |
-0.3 |
0.67 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0033 |
Q8N127 |
O5AS1_HUMAN |
0.08 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0034 |
Q9NYV7 |
T2R16_HUMAN |
-0.43 |
0.66 ± 0.13 |
7.1 ± 4.1 |
4djhA1,3odu_A,4djhA1,2ks9a,4jkvA2,1gzmA,2rh1_A,2ks9a,3vw7A,4djhA1 |
|
HG0035 |
P46093 |
GPR4_HUMAN |
-0.63 |
0.63 ± 0.13 |
8 ± 4.4 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
HG0036 |
P18825 |
ADA2C_HUMAN |
-1.64 |
0.52 ± 0.15 |
9.99 ± 4.6 |
4ib4A,2rh1_A,4iaqA,4iaqa,4ib4A,4ib4A,2rh1_A,4iaqa,4ib4A,4iaqA |
|
HG0037 |
B9EIS6 |
B9EIS6_HUMAN |
-0.32 |
0.67 ± 0.13 |
7 ± 4.1 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0038 |
P46663 |
BKRB1_HUMAN |
-0.34 |
0.67 ± 0.13 |
7.3 ± 4.2 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0039 |
Q8NH74 |
O10A6_HUMAN |
-0.12 |
0.7 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0040 |
O60755 |
GALR3_HUMAN |
0.17 |
0.74 ± 0.11 |
6.3 ± 3.8 |
2ks9A,4dkl_A,2ks9A,2ks9a,4mbsA,4ea3B2,4dkl_A,4ea3a,2ks9A,2ks9A |
|
HG0041 |
P0C623 |
OR4Q2_HUMAN |
-0.22 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3rzeA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0042 |
Q8NH09 |
OR8S1_HUMAN |
-0.59 |
0.64 ± 0.13 |
7.9 ± 4.4 |
4iaqA1,2rh1_A,3emlA1,3emla,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0043 |
Q8NH01 |
O2T11_HUMAN |
0.41 |
0.77 ± 0.1 |
5.4 ± 3.5 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
HG0044 |
Q9H2C5 |
O52A5_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3rzeA1,4grv_A,4gpoa,3emlA1,3emlA1 |
|
HG0045 |
Q96R48 |
OR2A5_HUMAN |
-0.26 |
0.68 ± 0.12 |
6.8 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0046 |
Q13467 |
FZD5_HUMAN |
-1.96 |
0.48 ± 0.15 |
9.99 ± 4.3 |
4jkvA,4jkv_A,4jkvA,4jkva,4jkvA,4jkvA,4jkv_A,4jkva,4jkvA,4jkvA |
|
HG0047 |
Q8NG94 |
O11H1_HUMAN |
-0.54 |
0.64 ± 0.13 |
7.6 ± 4.3 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0048 |
P34995 |
PE2R1_HUMAN |
-0.41 |
0.66 ± 0.13 |
7.7 ± 4.3 |
4mbsA,2rh1_A,2ks9A,2ycya,1l9ha,2z73A,2rh1_A,3zpqa,2ks9A,2ks9A |
|
HG0049 |
Q7RTR8 |
T2R42_HUMAN |
-0.2 |
0.69 ± 0.12 |
6.7 ± 4 |
4mbsA1,3rze_A,4djhA1,1l9ha,3rzeA1,1gzmA,3uon_A,2ks9a,3vw7A,4djhA1 |
HG0050 |
Q6IFL7 |
Q6IFL7_HUMAN |
-0.79 |
0.61 ± 0.14 |
8.1 ± 4.4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,3sn6r,3emlA1,3emlA1 |
|
HG0051 |
Q8NH36 |
Q8NH36_HUMAN |
-0.64 |
0.63 ± 0.13 |
7.8 ± 4.4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3v2wA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
HG0052 |
Q6ZMH4 |
Q6ZMH4_HUMAN |
-2.77 |
0.4 ± 0.13 |
9.99 ± 3.7 |
4k5yA2,4l6r_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA2 |
|
HG0053 |
O14626 |
GP171_HUMAN |
0.26 |
0.75 ± 0.1 |
5.8 ± 3.6 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3vw7_A,4mbsa,3vw7A,4mbsA1 |
HG0054 |
Q7Z7I1 |
Q7Z7I1_HUMAN |
-2.04 |
0.47 ± 0.15 |
9.99 ± 4.5 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0055 |
Q9H1C0 |
LPAR5_HUMAN |
-0.91 |
0.6 ± 0.14 |
8.7 ± 4.5 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3vw7_A,4mbsa,3vw7A,4mbsA1 |
HG0056 |
O43789 |
O43789_HUMAN |
0.25 |
0.75 ± 0.11 |
5.4 ± 3.4 |
3uonA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0057 |
Q8NH63 |
O51H1_HUMAN |
-0.4 |
0.66 ± 0.13 |
7.1 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3sn6R2,4grv_A,4gpoa,3emlA1,3emlA1 |
HG0058 |
Q96P65 |
QRFPR_HUMAN |
-0.53 |
0.65 ± 0.13 |
8.2 ± 4.5 |
2ks9A,2ks9A,4grv_A,2ks9a,2ks9A,2ks9A,3odu_A,2ks9a,2ks9A,2ks9A |
|
HG0059 |
P08908 |
5HT1A_HUMAN |
-1.05 |
0.58 ± 0.14 |
9.3 ± 4.6 |
4ib4A,2rh1_A,4iaqA,4iaqa,4ib4A,4ib4A,2rh1_A,4iaqa,4ib4A,4iaqA |
HG0060 |
Q8IVW0 |
Q8IVW0_HUMAN |
-1.53 |
0.53 ± 0.15 |
9.99 ± 4.6 |
3uonA,3uon_A,3uonA,3uona,4ib4A,3uonA,3uon_A,3uona,3uonA,3uonA |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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