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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 11 12 13 14 15 16 17 18 19 20 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0540 |
Q96KK4 |
O10C1_HUMAN |
-0.24 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0541 |
Q15743 |
OGR1_HUMAN |
-1.35 |
0.55 ± 0.15 |
9.7 ± 4.6 |
4mbsA1,3vw7_A,4mbsA1,4ea3a,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
HG0542 |
Q14332 |
FZD2_HUMAN |
-1.81 |
0.5 ± 0.15 |
9.99 ± 4.4 |
4jkvA,4jkv_A,4jkvA,4jkva,4jkvA,4jkvA,4jkv_A,4jkva,4jkvA,4jkvA |
|
HG0543 |
P32247 |
BRS3_HUMAN |
0.05 |
0.72 ± 0.11 |
6.7 ± 4 |
2ks9A,2rh1_A,2ks9A,2ks9a,2ks9A,4ea3B2,4grv_A,2ks9a,2ks9A,2ks9A |
HG0544 |
Q8NGX5 |
O10K1_HUMAN |
-0.23 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0545 |
Q8NG85 |
OR2L3_HUMAN |
-0.03 |
0.71 ± 0.12 |
6.3 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0546 |
Q96R28 |
OR2M2_HUMAN |
-0.71 |
0.62 ± 0.14 |
8.1 ± 4.4 |
4iaqA1,3uon_A,3emlA1,3emla,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0547 |
Q9H209 |
O10A4_HUMAN |
0.03 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
HG0548 |
P50391 |
NPY4R_HUMAN |
0.39 |
0.77 ± 0.1 |
5.8 ± 3.6 |
2ks9A,2ks9_A,2ks9A,2ks9a,2ks9A,2ks9A,2rh1_A,2ks9a,2ks9A,2ks9A |
|
HG0549 |
B9EIN4 |
B9EIN4_HUMAN |
0.23 |
0.74 ± 0.11 |
5.8 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0550 |
Q8NGK4 |
O52K1_HUMAN |
-0.14 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
|
HG0551 |
Q9BXC0 |
HCAR1_HUMAN |
-0.62 |
0.63 ± 0.13 |
7.9 ± 4.4 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3vw7_A,4mbsa,3vw7A,4mbsA1 |
HG0552 |
P32302 |
CXCR5_HUMAN |
-1.8 |
0.5 ± 0.15 |
9.99 ± 4.6 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0553 |
Q9NYW3 |
TA2R7_HUMAN |
-0.32 |
0.67 ± 0.13 |
7 ± 4.1 |
4djhA1,3vw7_A,4djhA1,2z73a,3rzeA1,2z73A,3eml_A,4ea3a,3vw7A,4djhA1 |
HG0554 |
B9EH20 |
B9EH20_HUMAN |
-0.55 |
0.64 ± 0.13 |
7.5 ± 4.3 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0555 |
P55085 |
PAR2_HUMAN |
-1.37 |
0.55 ± 0.15 |
9.9 ± 4.6 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,3vw7A1,3vw7_A,4mbsa,3vw7A,4mbsA1 |
HG0556 |
Q8NGT5 |
OR9A2_HUMAN |
-0.16 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0557 |
Q9UNW8 |
GP132_HUMAN |
-1.72 |
0.51 ± 0.15 |
9.99 ± 4.6 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
HG0558 |
Q96LD9 |
Q96LD9_HUMAN |
-0.15 |
0.69 ± 0.12 |
7.1 ± 4.2 |
4ib4A,3uon_A,4iaqA,4iaqa,4ib4A,4ib4A,2rh1_A,4iaqa,4ib4A,4iaqA |
|
HG0559 |
Q9BX81 |
Q9BX81_HUMAN |
-1.1 |
0.58 ± 0.14 |
9 ± 4.6 |
4mbsA1,3odu_A,4grvA1,1l9ha,3a6pA1,2z73A,2rh1_A,1l9ha,2ks9A,4djhA1 |
HG0560 |
Q8NGK9 |
OR5DG_HUMAN |
-0.25 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0561 |
Q8NGF6 |
O10W1_HUMAN |
0.49 |
0.78 ± 0.1 |
5.2 ± 3.3 |
4iaqA1,3vw7_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0562 |
P61073 |
CXCR4_HUMAN |
-0.48 |
0.65 ± 0.13 |
7.6 ± 4.3 |
3odua,3oduA,3odua,3oduA,3oduA,3oduA,3oduA,3odu_A,3odu_A,3oduA |
|
HG0563 |
Q96LB0 |
MRGX3_HUMAN |
-0.41 |
0.66 ± 0.13 |
7.2 ± 4.2 |
4mbsA1,3eml_A,4mbsA1,4mbsa,4mbsA1,2lnlA,4grv_A,4ea3a,4ea3B,4mbsA1 |
HG0564 |
Q8NGJ8 |
O51S1_HUMAN |
-0.42 |
0.66 ± 0.13 |
7.3 ± 4.2 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
|
HG0565 |
Q8N162 |
OR8H2_HUMAN |
-0.14 |
0.69 ± 0.12 |
6.6 ± 4 |
3pblA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0566 |
Q8TDV0 |
GP151_HUMAN |
-1.39 |
0.54 ± 0.15 |
9.99 ± 4.6 |
2rh1_A,2ks9A,2ks9A,2ks9a,2ks9A,4ea3B2,2rh1_A,2ks9a,2ks9A,2ks9A |
|
HG0567 |
Q6IEV9 |
OR4CB_HUMAN |
-0.15 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,3uon_A,2ydoa,3emlA1,3emlA1 |
HG0568 |
A6NET4 |
OR5K3_HUMAN |
-0.22 |
0.69 ± 0.12 |
6.8 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0569 |
Q8NGS6 |
O13C3_HUMAN |
-1.06 |
0.58 ± 0.14 |
8.9 ± 4.6 |
4iaqA1,4grv_A,3emlA1,2ydoa,3emlA1,1gzmA,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0570 |
Q6UR98 |
Q6UR98_HUMAN |
-0.03 |
0.71 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,3odu_A,3emlA1,3zpqa,2rh1A1,4iaqA1,2rh1_A,4eiya,3sn6R,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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