|
|
|
This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
|
Other GPCR-related resources
GPCR resources from other laboratories
|
[ HOME ]
[ SEARCH ]
[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 11 12 13 14 15 16 17 18 19 20 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0360 |
P13945 |
ADRB3_HUMAN |
-0.96 |
0.59 ± 0.14 |
9 ± 4.6 |
3sn6R2,2rh1_A,3sn6R,3zpqa,4ib4A,4ib4A,2rh1_A,3zpqa,2rh1A,3sn6R2 |
|
HG0361 |
Q9UPC5 |
GPR34_HUMAN |
-1.23 |
0.56 ± 0.15 |
9.5 ± 4.6 |
4mbsA1,4grv_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
HG0362 |
Q6GPG7 |
Q6GPG7_HUMAN |
0.67 |
0.8 ± 0.09 |
5.1 ± 3.3 |
3sn6R2,3v2y_A,2ks9A,3vg9a,2rh1A1,3pblA1,3v2y_A,3zpqa,3emlA,2ks9A |
|
HG0363 |
Q8NH56 |
O52N5_HUMAN |
-0.58 |
0.64 ± 0.13 |
7.6 ± 4.3 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0364 |
Q96R08 |
OR5BC_HUMAN |
0.04 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0365 |
Q99678 |
GPR20_HUMAN |
-0.8 |
0.61 ± 0.14 |
8.4 ± 4.5 |
4mbsA1,2rh1_A,4mbsA1,4ea3a,4mbsA1,4mbsA1,3odu_A,4mbsa,4ea3B,4mbsA1 |
HG0366 |
Q96LB2 |
MRGX1_HUMAN |
-0.4 |
0.66 ± 0.13 |
7.2 ± 4.2 |
4mbsA1,3eml_A,4mbsA1,4mbsa,4mbsA1,2lnlA,4grv_A,4ea3a,4ea3B,4mbsA1 |
|
HG0367 |
Q96R30 |
OR2V2_HUMAN |
0.28 |
0.75 ± 0.1 |
5.7 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0368 |
Q8NH43 |
OR4L1_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,2rh1_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0369 |
Q8NGX3 |
O10T2_HUMAN |
-0.2 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0370 |
B9EIP2 |
B9EIP2_HUMAN |
-0.12 |
0.7 ± 0.12 |
6.5 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
|
HG0371 |
Q8NGY0 |
O10X1_HUMAN |
-0.69 |
0.63 ± 0.14 |
7.9 ± 4.4 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0372 |
Q8NGK5 |
O52M1_HUMAN |
-0.2 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3rzeA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
|
HG0373 |
P50052 |
AGTR2_HUMAN |
-0.72 |
0.62 ± 0.14 |
8.2 ± 4.5 |
4mbsA1,3vw7_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3vw7_A,4mbsa,4mbsA,4mbsA1 |
HG0374 |
Q8NGF7 |
OR5BH_HUMAN |
0.19 |
0.74 ± 0.11 |
5.9 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0375 |
Q8TDU9 |
RL3R2_HUMAN |
-0.52 |
0.65 ± 0.13 |
7.8 ± 4.4 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4ea3B,4mbsA1 |
HG0376 |
Q86SG9 |
Q86SG9_HUMAN |
-0.48 |
0.65 ± 0.13 |
7.4 ± 4.2 |
4iaqA1,2rh1_A,3emlA1,1l9ha,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0377 |
Q9NYW6 |
TA2R3_HUMAN |
0.14 |
0.73 ± 0.11 |
6 ± 3.7 |
4mbsA1,3uon_A,4djhA1,2z73a,3rzeA1,1gzmA,3vw7_A,4ea3a,3vw7A,4djhA1 |
HG0378 |
Q8NH89 |
O5AK3_HUMAN |
-0.17 |
0.69 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,3emla,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0379 |
Q6IFR3 |
Q6IFR3_HUMAN |
-0.02 |
0.71 ± 0.12 |
6.3 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0380 |
C7E9I8 |
C7E9I8_HUMAN |
-0.35 |
0.67 ± 0.13 |
6.9 ± 4.1 |
4dkl_A,4dkl_A,4djhA,4djhA,4djhA,4djha,4djhA,4djhA,4djhA1,4djhA |
|
HG0381 |
Q6IF00 |
OR2T2_HUMAN |
-0.29 |
0.68 ± 0.12 |
7 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0382 |
P18089 |
ADA2B_HUMAN |
0.27 |
0.75 ± 0.1 |
6.5 ± 3.9 |
2rh1A,3odu_A,3uonA,3uona,4ib4A,2rh1A,2rh1_A,4iaqa,4ib4A,3uonA |
|
HG0383 |
A6NMU1 |
O52A4_HUMAN |
-0.07 |
0.7 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,3sn6R2,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0384 |
Q5EKN0 |
Q5EKN0_HUMAN |
-1.01 |
0.59 ± 0.14 |
8.8 ± 4.6 |
4mbsA,4mbsA1,4mbsA1,4mbsA,4mbsA,4mbsA,4mbsA1,4mbsA,4mbsA1,4mbsA1 |
|
HG0385 |
Q9BPV8 |
P2Y13_HUMAN |
-1.09 |
0.58 ± 0.14 |
9 ± 4.6 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3vw7_A,4mbsa,3vw7A,4mbsA1 |
HG0386 |
Q8NGB9 |
OR4F6_HUMAN |
-0.21 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0387 |
Q9GZM6 |
OR8D2_HUMAN |
0 |
0.71 ± 0.11 |
6.3 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0388 |
Q8IXE4 |
Q8IXE4_HUMAN |
-0.77 |
0.62 ± 0.14 |
8.5 ± 4.5 |
4k5yA2,4k5y_A,4l6rA,4l6ra,4l6rA,4l6rA2,4k5y_A,4l6ra,4l6rA,4l6rA2 |
|
HG0389 |
Q16570 |
ACKR1_HUMAN |
-1.84 |
0.49 ± 0.15 |
9.99 ± 4.6 |
4mbsA1,4grv_A,4mbsA1,4ea3a,4mbsA1,4mbsA1,3odu_A,4mbsa,3oduA,4mbsA1 |
HG0390 |
Q13606 |
OR5I1_HUMAN |
0.09 |
0.73 ± 0.11 |
6.1 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
|
|
|