|
|
|
This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
|
Other GPCR-related resources
GPCR resources from other laboratories
|
[ HOME ]
[ SEARCH ]
[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 11 12 13 14 15 16 17 18 19 20 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0330 |
Q8NH51 |
OR8K3_HUMAN |
0.02 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0331 |
Q8NGI3 |
O56B1_HUMAN |
-0.57 |
0.64 ± 0.13 |
7.6 ± 4.3 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
HG0332 |
P08912 |
ACM5_HUMAN |
-1.93 |
0.48 ± 0.15 |
9.99 ± 4.4 |
3uonA,3uon_A,3uonA,3uona,4ib4A,3uonA,3uon_A,3uona,3uonA,3uonA |
|
HG0333 |
O95007 |
OR6B1_HUMAN |
-0.22 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0334 |
Q8NGI2 |
O52N4_HUMAN |
-0.37 |
0.67 ± 0.13 |
7.1 ± 4.2 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
|
HG0335 |
Q8NGZ4 |
OR2G3_HUMAN |
0.32 |
0.76 ± 0.1 |
5.6 ± 3.5 |
3pblA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0336 |
Q8NGH7 |
O52L1_HUMAN |
-0.95 |
0.59 ± 0.14 |
8.5 ± 4.5 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
|
HG0337 |
Q8NGN3 |
O10G4_HUMAN |
-0.09 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0338 |
P58182 |
O12D2_HUMAN |
0.13 |
0.73 ± 0.11 |
6 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0339 |
B2RU31 |
B2RU31_HUMAN |
0.39 |
0.76 ± 0.1 |
5.8 ± 3.6 |
1u19A,1u19_A,2g87A,1l9ha,1l9ha,1gzmA,1u19_A,1l9ha,2ziyA,2g87A |
HG0340 |
P32248 |
CCR7_HUMAN |
-2.03 |
0.47 ± 0.15 |
9.99 ± 4.5 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0341 |
P11229 |
ACM1_HUMAN |
-0.59 |
0.64 ± 0.13 |
8.5 ± 4.5 |
3uonA,3uon_A,3uonA,3uona,4ib4A,3uonA,3uon_A,4iaqa,3uonA,3uonA |
HG0342 |
A6NGY5 |
O51F1_HUMAN |
-0.3 |
0.67 ± 0.12 |
7 ± 4.1 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,3uonA1,4grv_A,4gpoa,3emlA1,3emlA1 |
|
HG0343 |
B9EIN8 |
B9EIN8_HUMAN |
-0.26 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0344 |
A8CAH9 |
A8CAH9_HUMAN |
0.11 |
0.73 ± 0.11 |
6 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0345 |
Q8NH07 |
O11H2_HUMAN |
-0.56 |
0.64 ± 0.13 |
7.6 ± 4.3 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0346 |
B9EKW0 |
B9EKW0_HUMAN |
0.04 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0347 |
B2KKJ9 |
B2KKJ9_HUMAN |
-0.97 |
0.59 ± 0.14 |
8.7 ± 4.6 |
4mbsA,4mbsA,4mbsa,4mbsA,4mbsA,4mbsa,4mbsA1,4mbsA1,4mbsA1,4mbsA1 |
HG0348 |
P30559 |
OXYR_HUMAN |
-0.53 |
0.65 ± 0.13 |
7.9 ± 4.4 |
4mbsA,4grv_A,4iaqA1,2ycya,1l9ha,3pblA1,2rh1_A,1l9ha,4ea3B,4iaqA1 |
|
HG0349 |
Q8NH72 |
OR4C6_HUMAN |
0.11 |
0.73 ± 0.11 |
6 ± 3.7 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,3uon_A,2ydoa,3emlA1,3emlA1 |
HG0350 |
Q8NHC6 |
O14L1_HUMAN |
0.4 |
0.77 ± 0.1 |
5.4 ± 3.4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0351 |
O95013 |
O4F21_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0352 |
Q6IFM9 |
Q6IFM9_HUMAN |
-0.9 |
0.6 ± 0.14 |
8.5 ± 4.5 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0353 |
A1L485 |
A1L485_HUMAN |
0.04 |
0.72 ± 0.11 |
6.1 ± 3.8 |
4mbsA1,3rze_A,4djhA1,3vg9a,4jkvA2,1gzmA,3vw7_A,4ea3a,3vw7A,4djhA1 |
HG0354 |
Q8NHA6 |
OR2W6_HUMAN |
-0.35 |
0.67 ± 0.13 |
7.1 ± 4.1 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0355 |
Q6NWR5 |
Q6NWR5_HUMAN |
-1.09 |
0.58 ± 0.14 |
9.1 ± 4.6 |
4mbsA1,3vw7_A,4mbsA1,4ea3a,4mbsA1,4mbsA1,3odu_A,4mbsa,3vw7A,4mbsA1 |
HG0356 |
Q9BZJ7 |
GPR62_HUMAN |
-1.42 |
0.54 ± 0.15 |
9.9 ± 4.6 |
4iaqA1,3uon_A,4iaqA1,2ycya,2rh1A1,4iaqA1,2rh1_A,3zpqa,3emlA,4iaqA1 |
|
HG0357 |
Q8NH64 |
O51A7_HUMAN |
-0.19 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,3uon_A,4gpoa,3emlA1,3emlA1 |
HG0358 |
A6NL26 |
OR5BL_HUMAN |
0.35 |
0.76 ± 0.1 |
5.5 ± 3.5 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0359 |
P21554 |
CNR1_HUMAN |
-2.48 |
0.43 ± 0.14 |
9.99 ± 4.1 |
4iaqA1,3sn6R,3pbl_A,4ldea,4iaqA1,3sn6R,3vg9a,4iaqA1,4iaqA1,2rh1_A |
HG0360 |
P13945 |
ADRB3_HUMAN |
-0.96 |
0.59 ± 0.14 |
9 ± 4.6 |
3sn6R2,2rh1_A,3sn6R,3zpqa,4ib4A,4ib4A,2rh1_A,3zpqa,2rh1A,3sn6R2 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
|
|
|