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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 11 12 13 14 15 16 17 18 19 20 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0300 |
A1A4W1 |
A1A4W1_HUMAN |
-2.46 |
0.43 ± 0.14 |
9.99 ± 4.3 |
4grvA1,4grv_A,4grvA1,3vg9a,3rzeA1,3sn6R2,4grv_A,4ea3a,4grvA,4grvA1 |
|
HG0301 |
Q8NI49 |
Q8NI49_HUMAN |
-0.61 |
0.64 ± 0.13 |
7.6 ± 4.3 |
4iaqA1,3uon_A,3uonA,3zpqa,4iaqA,4iaqA,3uon_A,3zpqa,3uonA,3sn6R2 |
HG0302 |
Q8NH40 |
OR6S1_HUMAN |
-0.43 |
0.66 ± 0.13 |
7.3 ± 4.2 |
4iaqA1,4grv_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0303 |
Q6NWS8 |
Q6NWS8_HUMAN |
-0.61 |
0.64 ± 0.13 |
7.8 ± 4.4 |
4iaqA1,3pbl_A,4iaqA1,3vg9a,4iaqA1,4iaqA1,2rh1_A,3zpqa,3emlA,4iaqA1 |
HG0304 |
P08100 |
OPSD_HUMAN |
1.85 |
0.98 ± 0.05 |
2.8 ± 2 |
2hpyA,2hpyA,2hpyA,2hpyA,2hpyA,2hpyA,2hpyA,2g87A,1u19A,1u19_A |
|
HG0305 |
Q9H341 |
O51M1_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0306 |
Q8NGL2 |
OR5L1_HUMAN |
-0.07 |
0.7 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0307 |
P51810 |
GP143_HUMAN |
-2.41 |
0.43 ± 0.14 |
9.99 ± 4.3 |
4k5yA2,2ziya,4grv_A,4l6rA,4l6ra,4jkvA2,4k5yA2,4l6r_A,4l6ra,4l6rA |
HG0308 |
O15552 |
FFAR2_HUMAN |
-0.38 |
0.66 ± 0.13 |
7.2 ± 4.2 |
4mbsA1,2rh1_A,4djhA1,4ea3a,4mbsA1,4djhA1,3vw7_A,4ea3a,3vw7A,4djhA1 |
|
HG0309 |
Q8NH48 |
OR5B3_HUMAN |
0.23 |
0.74 ± 0.11 |
5.8 ± 3.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0310 |
Q96R67 |
OR4CC_HUMAN |
-0.1 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0311 |
Q8TCW9 |
PKR1_HUMAN |
-1.03 |
0.58 ± 0.14 |
9.1 ± 4.6 |
4mbsA1,4grv_A,4grvA1,4ea3a,1l9ha,4ea3B2,2rh1_A,4ea3a,4ea3B,4mbsA1 |
HG0312 |
P21728 |
DRD1_HUMAN |
-2.4 |
0.43 ± 0.14 |
9.99 ± 4.2 |
3sn6R,2rh1_A,3sn6R2,3zpqa,4ib4A,4ib4A,2rh1_A,3zpqa,3sn6R,3sn6R2 |
|
HG0313 |
Q6NWS6 |
Q6NWS6_HUMAN |
-0.77 |
0.62 ± 0.14 |
8.1 ± 4.4 |
4iaqA1,3pbl_A,4iaqA1,3vg9a,4iaqA1,4iaqA1,2rh1_A,3zpqa,3emlA,4iaqA1 |
HG0314 |
P33765 |
AA3R_HUMAN |
0.21 |
0.74 ± 0.11 |
5.9 ± 3.7 |
3sn6R2,3eml_A,4iaqA1,2ycya,2rh1A1,3sn6R2,3eml_A,3zpqa,3emlA,4iaqA1 |
|
HG0315 |
P28336 |
NMBR_HUMAN |
-1.1 |
0.58 ± 0.14 |
9.3 ± 4.6 |
4grvA1,2rh1_A,4mbsA1,4ea3a,1l9ha,4ea3B2,2rh1_A,4ea3a,4ea3B,4mbsA1 |
HG0316 |
Q96LA9 |
MRGX4_HUMAN |
-0.57 |
0.64 ± 0.13 |
7.6 ± 4.3 |
4mbsA1,2rh1_A,4mbsA1,4mbsa,4mbsA1,2lnlA,4grv_A,4ea3a,4ea3B,4mbsA1 |
|
HG0317 |
Q9Y3N9 |
OR2W1_HUMAN |
-0.13 |
0.7 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0318 |
Q8NGW6 |
OR6K6_HUMAN |
-1 |
0.59 ± 0.14 |
8.7 ± 4.6 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0319 |
Q8NGG0 |
OR8J3_HUMAN |
-0.06 |
0.71 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0320 |
A6ND48 |
O14I1_HUMAN |
-0.1 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0321 |
Q86SG0 |
Q86SG0_HUMAN |
-0.51 |
0.65 ± 0.13 |
7.4 ± 4.3 |
4iaqA1,3uon_A,3emlA1,3emla,3emlA1,2z73A,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0322 |
O75388 |
GPR32_HUMAN |
-0.45 |
0.66 ± 0.13 |
7.6 ± 4.3 |
4mbsA1,2rh1_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0323 |
Q99788 |
CML1_HUMAN |
-0.9 |
0.6 ± 0.14 |
8.7 ± 4.5 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4ea3B,4mbsA1 |
HG0324 |
P51677 |
CCR3_HUMAN |
-0.38 |
0.66 ± 0.13 |
7.4 ± 4.2 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0325 |
P60893 |
GPR85_HUMAN |
0.18 |
0.74 ± 0.11 |
6.3 ± 3.8 |
4ib4A,3uon_A,4iaqA1,3zpqa,4ib4A,4ib4A,3uon_A,3zpqa,4ib4A,4iaqA1 |
HG0326 |
P0C645 |
OR4E1_HUMAN |
-0.28 |
0.68 ± 0.12 |
6.9 ± 4.1 |
4iaqA1,3uon_A,3emlA1,1l9ha,3emlA1,3v2wA1,3uon_A,2ydoa,3emlA1,3emlA1 |
|
HG0327 |
Q8NGF4 |
O5AP2_HUMAN |
-0.39 |
0.66 ± 0.13 |
7.2 ± 4.2 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0328 |
Q52R94 |
Q52R94_HUMAN |
-2.39 |
0.44 ± 0.14 |
9.99 ± 4.5 |
4iaqA1,3odu_A,3emlA1,3emla,3emlA1,4iaqA1,4grv_A,3sn6r,3emlA1,3emlA1 |
|
HG0329 |
Q9NYW1 |
TA2R9_HUMAN |
0.01 |
0.71 ± 0.11 |
6.3 ± 3.8 |
4djhA1,3vw7_A,4djhA1,2z73a,3rzeA1,2z73A,2rh1_A,4ea3a,3vw7A,4djhA1 |
HG0330 |
Q8NH51 |
OR8K3_HUMAN |
0.02 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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