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This page contains 3D structural models (Version 2,
built on March 2014) of all 1,062 putative G protein-coupled receptors
(GPCRs) in the human genome
generated by the GPCR-I-TASSER
pipeline.
In GPCR-I-TASSER, the GPCR sequences are first threaded through the GPCR template library to
identify muliple structure templates by the LOMETS
programs.
When significant templates are identified, full-length models will be constructed by the
I-TASSER based fragment assembly simulations,
which are assisted by a GPCR and membrane specific force field and spatial restraints collected from
mutagenesis experiments in GPCR-RD.
If there is no significant template hit, an ab initio folding procedure is developed to assemble the
seven transmembrane helix bundle from artificial helices, followed by the I-TASSER based refinment
simulations.
For multiple domain GPCRs, structural models are built by GPCR-I-TASSER for each domain separately
which are then assembly by the I-TASSER approach.
All the models are finally subjected to FG-MD
for fragment-guided molecular dynamic
simulation refinements.
Note:
- For each entry, the GPCR-HGmod data include top-five full-length models, LOMETS template and alignments,
secondary structure prediction, solvent accessibility prediction, and residue-specific error and B-factor
predictions.
- The GPCR-I-TASSER models have generally higher resolution in the transmembrane regions;
users should bear cautions on using the loop and tail regions of the models
which have usually low resolution. Users are encouraged to check the attached
residue-specific quality (RSQ) prediction to
assess the local structure errors.
- All the models were constructed from the GPCR sequence alone. An attachment of addition
ligand molecules may change the conformation of the structures.
- All experimentally solved GPCR structures can be found at
GPCR-EXP Database.
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Other GPCR-related resources
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[
GPCR-HGmod Version 1: Human GPCR structure models generated in Jun 2013 ]
[
GPCR-HGmod Version 2: Human GPCR structure models generated in Mar 2014 ]
[
GPCR-HGmod Version 3: Human GPCR structure models generated in Aug 2014 ]
Structure Models of GPCRs in Human Genome << < 1 2 3 4 5 6 7 8 9 10 > >>
HG ID |
UniProt ID |
Entry Name |
C-score |
Estimated TM-score |
Estimated RMSD |
Top 10 Templates |
HG0001 |
Q92847 |
GHSR_HUMAN |
0.23 |
0.74 ± 0.11 |
6.1 ± 3.8 |
4mbsA1,2rh1_A,2ks9A,2ks9a,1l9ha,4ea3B2,2rh1_A,4ea3a,2ks9A,2ks9A |
|
HG0002 |
B9EIL6 |
B9EIL6_HUMAN |
-0.12 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
HG0003 |
Q8WZA6 |
OR1E3_HUMAN |
-0.73 |
0.62 ± 0.14 |
8.1 ± 4.4 |
4iaqA1,3uon_A,3emlA1,3emla,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0004 |
P30872 |
SSR1_HUMAN |
-0.23 |
0.68 ± 0.12 |
7.3 ± 4.2 |
4mbsA1,2rh1_A,2ks9A,2ks9a,4mbsA1,4djhA1,2rh1_A,4ea3a,4djhA,2ks9A |
HG0005 |
Q6IFB0 |
Q6IFB0_HUMAN |
-1 |
0.59 ± 0.14 |
8.8 ± 4.6 |
4iaqA1,2rh1_A,3emlA1,2ydoa,3emlA1,3v2wA1,4grv_A,3sn6r,3emlA1,3emlA1 |
|
HG0006 |
Q8NGC2 |
OR4E2_HUMAN |
-0.39 |
0.66 ± 0.13 |
7.1 ± 4.2 |
4iaqA1,2rh1_A,3emlA1,1l9ha,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0007 |
Q96R27 |
OR2M4_HUMAN |
0.05 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0008 |
Q17RS1 |
Q17RS1_HUMAN |
0.08 |
0.72 ± 0.11 |
6.1 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0009 |
Q9H340 |
O51B6_HUMAN |
-0.08 |
0.7 ± 0.12 |
6.4 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,3uon_A,4gpoa,3emlA1,3emlA1 |
|
HG0010 |
A0N0Q0 |
A0N0Q0_HUMAN |
-2.06 |
0.47 ± 0.15 |
9.99 ± 4.5 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
HG0011 |
Q6IFD1 |
Q6IFD1_HUMAN |
0.74 |
0.81 ± 0.09 |
4.5 ± 3 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,2z73A,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0012 |
Q8NGE5 |
O10A7_HUMAN |
-0.18 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0013 |
O00421 |
CCRL2_HUMAN |
-0.52 |
0.65 ± 0.13 |
7.6 ± 4.3 |
4mbsA1,3odu_A,4mbsA1,4mbsa,4mbsA1,4mbsA1,3odu_A,4mbsa,4mbsA,4mbsA1 |
|
HG0014 |
Q86UK4 |
Q86UK4_HUMAN |
-0.5 |
0.65 ± 0.13 |
7.5 ± 4.3 |
4mbsA1,3vw7_A,4djhA1,2z73a,3a6pA1,2z73A,3vw7_A,1l9ha,3vw7A,4djhA1 |
HG0015 |
Q8NHA4 |
O2AE1_HUMAN |
0.23 |
0.74 ± 0.11 |
5.9 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3rzeA1,4grv_A,2ydoa,3emlA1,3emlA1 |
|
HG0016 |
Q9H345 |
Q9H345_HUMAN |
-0.19 |
0.69 ± 0.12 |
6.6 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,2z73A,4grv_A,4gpoa,3emlA1,3emlA1 |
HG0017 |
Q6UR95 |
Q6UR95_HUMAN |
-0.24 |
0.68 ± 0.12 |
6.8 ± 4.1 |
4iaqA1,3odu_A,3emlA1,2ydoa,2rh1A1,3sn6R2,2rh1_A,4eiya,3sn6R,3emlA1 |
|
HG0018 |
Q5T6D8 |
Q5T6D8_HUMAN |
-0.63 |
0.63 ± 0.13 |
8.4 ± 4.5 |
2ks9A,4grv_A,2ks9A,2ks9a,2ks9A,2ks9A,4grv_A,2ks9a,2ks9A,2ks9A |
HG0019 |
Q9BXE9 |
VN1R3_HUMAN |
-0.49 |
0.65 ± 0.13 |
7.3 ± 4.2 |
4mbsA1,3odu_A,4grvA1,2z73a,1xm9A,2z73A,2rh1_A,2ks9a,2ks9A,4djhA1 |
|
HG0020 |
Q8NGX1 |
O2T34_HUMAN |
-0.09 |
0.7 ± 0.12 |
6.5 ± 3.9 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,4iaqA1,4grv_A,2ydoa,3emlA1,3emlA1 |
HG0021 |
Q8NH68 |
Q8NH68_HUMAN |
-0.23 |
0.68 ± 0.12 |
6.8 ± 4 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,3uonA1,2rh1_A,4gpoa,3emlA1,3emlA1 |
|
HG0022 |
Q9Y5X5 |
NPFF2_HUMAN |
-1.94 |
0.48 ± 0.15 |
9.99 ± 4.4 |
2ks9A,4ea3B,4mbs_A,4ea3B,2ks9A,4ldea,2ks9a,4ea3B,2ks9A,4ea3B |
HG0023 |
Q6IFR1 |
Q6IFR1_HUMAN |
-0.53 |
0.65 ± 0.13 |
7.5 ± 4.3 |
4iaqA1,4mbs_A,3emlA1,2ydoa,3emlA1,4iaqA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
|
HG0024 |
Q8NGK1 |
O51G1_HUMAN |
-0.19 |
0.69 ± 0.12 |
6.7 ± 4 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3uonA1,3uon_A,4gpoa,3emlA1,3emlA1 |
HG0025 |
Q8NGJ0 |
OR5A1_HUMAN |
0.11 |
0.73 ± 0.11 |
6.1 ± 3.7 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,3vw7_A,2ydoa,3emlA1,3emlA1 |
|
HG0026 |
P47884 |
OR1D4_HUMAN |
0.05 |
0.72 ± 0.11 |
6.2 ± 3.8 |
4iaqA1,3uon_A,3emlA1,2ydoa,3emlA1,3v2wA1,2rh1_A,2ydoa,3emlA1,3emlA1 |
HG0027 |
Q96RI9 |
TAAR9_HUMAN |
-0.11 |
0.7 ± 0.12 |
6.7 ± 4 |
3sn6R2,2rh1_A,3sn6R2,4ldea,4iaqA1,4iaqA1,2rh1_A,3zpqa,3sn6R,2rh1A1 |
|
HG0028 |
P29371 |
NK3R_HUMAN |
-2.05 |
0.47 ± 0.15 |
9.99 ± 4.4 |
2ks9A,2ks9_A,2ks9A,2ks9a,2ks9A,2ks9A,2ks9_A,2ks9a,2ks9A,2ks9A |
HG0029 |
P08173 |
ACM4_HUMAN |
-0.25 |
0.68 ± 0.12 |
7.8 ± 4.4 |
3uonA,3uon_A,3uonA,3uona,4ib4A,3uonA,3uon_A,3uona,3uonA,3uonA |
|
HG0030 |
Q5CZ62 |
Q5CZ62_HUMAN |
-0.28 |
0.68 ± 0.12 |
7.6 ± 4.3 |
2ks9A,2rh1_A,2ks9A,2ks9a,1l9ha,1gzmA,4grv_A,2ks9a,2ks9A,2ks9A |
Reference:
J Zhang, J Yang, R Jang, Y Zhang.
Hybrid structure modeling of G protein-coupled receptors in the human
genome.
submitted (2015).
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