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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    11001 1h4t:D (2.9) BS01 PRO 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    11002 1h4t:D (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    11003 1h50:A (1.5) BS01 FMN ? GO:0000166 ... P71278 11428899
    11004 1h51:A (1.6) BS01 FMN ? GO:0000166 ... P71278 11428899
    11005 1h52:A (2.0) BS01 POP 3.1.27.- GO:0001525 ... P03950 11468363
    11006 1h53:A (2.0) BS01 PO4 3.1.27.- GO:0001525 ... P03950 11468363
    11007 1h55:A (1.61) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11008 1h55:A (1.61) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11009 1h55:A (1.61) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11010 1h55:A (1.61) BS04 O 1.11.1.7 GO:0004601 ... P00433 12024218
    11011 1h57:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11012 1h57:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11013 1h57:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11014 1h57:A (1.6) BS04 OXY 1.11.1.7 GO:0004601 ... P00433 12024218
    11015 1h58:A (1.7) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11016 1h58:A (1.7) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11017 1h58:A (1.7) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11018 1h5a:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11019 1h5a:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11020 1h5a:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11021 1h5c:A (1.62) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11022 1h5c:A (1.62) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11023 1h5c:A (1.62) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11024 1h5d:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11025 1h5d:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11026 1h5d:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11027 1h5e:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11028 1h5e:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11029 1h5e:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11030 1h5f:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11031 1h5f:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11032 1h5f:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11033 1h5g:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11034 1h5g:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11035 1h5g:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11036 1h5h:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11037 1h5h:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11038 1h5h:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11039 1h5i:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11040 1h5i:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11041 1h5i:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11042 1h5j:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11043 1h5j:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11044 1h5j:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11045 1h5k:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11046 1h5k:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11047 1h5k:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11048 1h5l:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11049 1h5l:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11050 1h5l:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11051 1h5m:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    11052 1h5m:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11053 1h5m:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    11054 1h5r:A (1.9) BS01 THM 2.7.7.24 GO:0005829 ... P37744 11697907
    11055 1h5r:A (1.9) BS02 THM 2.7.7.24 GO:0005829 ... P37744 11697907
    11056 1h5r:A (1.9) BS03 G1P 2.7.7.24 GO:0005829 ... P37744 11697907
    11057 1h5r:B (1.9) BS01 THM 2.7.7.24 GO:0005829 ... P37744 11697907
    11058 1h5r:B (1.9) BS02 THM 2.7.7.24 GO:0005829 ... P37744 11697907
    11059 1h5r:B (1.9) BS03 G1P 2.7.7.24 GO:0005829 ... P37744 11697907
    11060 1h5r:C (1.9) BS01 THM 2.7.7.24 GO:0005829 ... P37744 11697907
    11061 1h5r:C (1.9) BS02 THM 2.7.7.24 GO:0005829 ... P37744 11697907
    11062 1h5r:C (1.9) BS03 G1P 2.7.7.24 GO:0005829 ... P37744 11697907
    11063 1h5r:D (1.9) BS01 THM 2.7.7.24 GO:0005829 ... P37744 11697907
    11064 1h5r:D (1.9) BS02 THM 2.7.7.24 GO:0005829 ... P37744 11697907
    11065 1h5r:D (1.9) BS03 G1P 2.7.7.24 GO:0005829 ... P37744 11697907
    11066 1h5s:A (2.3) BS01 TMP 2.7.7.24 GO:0005829 ... P37744 11697907
    11067 1h5s:A (2.3) BS02 TMP 2.7.7.24 GO:0005829 ... P37744 11697907
    11068 1h5s:A (2.3) BS03 TMP 2.7.7.24 GO:0005829 ... P37744 11697907
    11069 1h5s:B (2.3) BS01 TMP 2.7.7.24 GO:0005829 ... P37744 11697907
    11070 1h5s:B (2.3) BS02 TMP 2.7.7.24 GO:0005829 ... P37744 11697907
    11071 1h5s:B (2.3) BS03 TMP 2.7.7.24 GO:0005829 ... P37744 11697907
    11072 1h5s:C (2.3) BS01 TMP 2.7.7.24 GO:0005829 ... P37744 11697907
    11073 1h5s:C (2.3) BS02 TMP 2.7.7.24 GO:0005829 ... P37744 11697907
    11074 1h5s:C (2.3) BS03 TMP 2.7.7.24 GO:0005829 ... P37744 11697907
    11075 1h5s:D (2.3) BS01 TMP 2.7.7.24 GO:0005829 ... P37744 11697907
    11076 1h5s:D (2.3) BS02 TMP 2.7.7.24 GO:0005829 ... P37744 11697907
    11077 1h5s:D (2.3) BS03 TMP 2.7.7.24 GO:0005829 ... P37744 11697907
    11078 1h5t:A (1.9) BS01 TYD 2.7.7.24 GO:0005829 ... P37744 11697907
    11079 1h5t:A (1.9) BS02 DAU 2.7.7.24 GO:0005829 ... P37744 11697907
    11080 1h5t:A (1.9) BS03 TYD 2.7.7.24 GO:0005829 ... P37744 11697907
    11081 1h5t:B (1.9) BS01 TYD 2.7.7.24 GO:0005829 ... P37744 11697907
    11082 1h5t:B (1.9) BS02 DAU 2.7.7.24 GO:0005829 ... P37744 11697907
    11083 1h5t:B (1.9) BS03 TYD 2.7.7.24 GO:0005829 ... P37744 11697907
    11084 1h5t:C (1.9) BS01 TYD 2.7.7.24 GO:0005829 ... P37744 11697907
    11085 1h5t:C (1.9) BS02 TYD 2.7.7.24 GO:0005829 ... P37744 11697907
    11086 1h5t:C (1.9) BS03 DAU 2.7.7.24 GO:0005829 ... P37744 11697907
    11087 1h5t:D (1.9) BS01 TYD 2.7.7.24 GO:0005829 ... P37744 11697907
    11088 1h5t:D (1.9) BS02 TYD 2.7.7.24 GO:0005829 ... P37744 11697907
    11089 1h5t:D (1.9) BS03 DAU 2.7.7.24 GO:0005829 ... P37744 11697907
    11090 1h5u:A (1.76) BS01 CHI 2.4.1.1 GO:0000166 ... P00489 11886794 MOAD: ic50=178nM
    PDBbind: -logKd/Ki=6.75, IC50=178nM
    11091 1h5u:A (1.76) BS02 GLC 2.4.1.1 GO:0000166 ... P00489 11886794
    11092 1h5u:A (1.76) BS03 PLP 2.4.1.1 GO:0000166 ... P00489 11886794
    11093 1h5y:A (2.0) BS01 PO4 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    11094 1h5y:A (2.0) BS02 PO4 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    11095 1h5y:A (2.0) BS03 GOL 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    11096 1h5y:A (2.0) BS04 GOL 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    11097 1h5y:B (2.0) BS01 PO4 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    11098 1h5y:B (2.0) BS02 PO4 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    11099 1h5y:B (2.0) BS03 GOL 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    11100 1h5y:B (2.0) BS04 GOL 4.3.2.10 GO:0000105 ... Q8ZY16 11679715
    11101 1h5z:A (2.05) BS01 HEM 1.14.15.36 GO:0004497 ... P9WPP9 15530358
    11102 1h60:A (1.6) BS01 FMN ? GO:0000166 ... P71278 11428899
    11103 1h60:A (1.6) BS02 STR ? GO:0000166 ... P71278 11428899 MOAD: Kd=20uM
    PDBbind: -logKd/Ki=4.70, Kd=20uM
    11104 1h61:A (1.4) BS01 FMN ? GO:0000166 ... P71278 11428899
    11105 1h61:A (1.4) BS02 PDN ? GO:0000166 ... P71278 11428899 MOAD: Kd=13uM
    PDBbind: -logKd/Ki=4.89, Kd=13uM
    11106 1h62:A (1.9) BS01 ANB ? GO:0000166 ... P71278 11428899 MOAD: Kd=17uM
    PDBbind: -logKd/Ki=4.77, Kd=17uM
    11107 1h62:A (1.9) BS02 FMN ? GO:0000166 ... P71278 11428899
    11108 1h63:A (1.62) BS01 FMN ? GO:0000166 ... P71278 11428899
    11109 1h65:A (2.0) BS01 GDP 3.6.5.- GO:0005525 ... Q41009 11753431
    11110 1h65:A (2.0) BS02 MG 3.6.5.- GO:0005525 ... Q41009 11753431
    11111 1h65:B (2.0) BS01 GDP 3.6.5.- GO:0005525 ... Q41009 11753431
    11112 1h65:B (2.0) BS02 MG 3.6.5.- GO:0005525 ... Q41009 11753431
    11113 1h65:B (2.0) BS03 GDP 3.6.5.- GO:0005525 ... Q41009 11753431
    11114 1h65:C (2.0) BS01 GDP 3.6.5.- GO:0005525 ... Q41009 11753431
    11115 1h65:C (2.0) BS02 GDP 3.6.5.- GO:0005525 ... Q41009 11753431
    11116 1h65:C (2.0) BS03 MG 3.6.5.- GO:0005525 ... Q41009 11753431
    11117 1h66:A (2.0) BS01 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    11118 1h66:A (2.0) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11119 1h66:A (2.0) BS03 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    11120 1h66:A (2.0) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11121 1h66:B (2.0) BS01 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    11122 1h66:B (2.0) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11123 1h66:B (2.0) BS03 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    11124 1h66:B (2.0) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11125 1h66:C (2.0) BS01 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    11126 1h66:C (2.0) BS02 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    11127 1h66:C (2.0) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11128 1h66:D (2.0) BS01 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    11129 1h66:D (2.0) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11130 1h66:D (2.0) BS03 RH1 1.6.5.2 GO:0000209 ... P15559 11587640
    11131 1h66:D (2.0) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11132 1h68:A (2.1) BS01 RET ? GO:0005216 ... P42196 11504917
    11133 1h68:A (2.1) BS02 CL ? GO:0005216 ... P42196 11504917
    11134 1h69:A (1.86) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11135 1h69:A (1.86) BS02 ARH 1.6.5.2 GO:0000209 ... P15559 11587640
    11136 1h69:A (1.86) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11137 1h69:A (1.86) BS04 ARH 1.6.5.2 GO:0000209 ... P15559 11587640
    11138 1h69:B (1.86) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11139 1h69:B (1.86) BS02 ARH 1.6.5.2 GO:0000209 ... P15559 11587640
    11140 1h69:B (1.86) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11141 1h69:B (1.86) BS04 ARH 1.6.5.2 GO:0000209 ... P15559 11587640
    11142 1h69:C (1.86) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11143 1h69:C (1.86) BS02 ARH 1.6.5.2 GO:0000209 ... P15559 11587640
    11144 1h69:C (1.86) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11145 1h69:C (1.86) BS04 ARH 1.6.5.2 GO:0000209 ... P15559 11587640
    11146 1h69:D (1.86) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11147 1h69:D (1.86) BS02 ARH 1.6.5.2 GO:0000209 ... P15559 11587640
    11148 1h69:D (1.86) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 11587640
    11149 1h69:D (1.86) BS04 ARH 1.6.5.2 GO:0000209 ... P15559 11587640
    11150 1h6e:A (3.6) BS01 peptide ? GO:0006886 ... Q96CW1 11583591
    11151 1h6f:A (1.7) BS01 dna ? GO:0000978 ... O15119 12005433
    11152 1h6f:A (1.7) BS02 dna ? GO:0000978 ... O15119 12005433
    11153 1h6f:B (1.7) BS01 dna ? GO:0000978 ... O15119 12005433
    11154 1h6f:B (1.7) BS02 dna ? GO:0000978 ... O15119 12005433
    11155 1h6h:A (1.7) BS01 PIB ? GO:0006909 ... Q15080 11684018 MOAD: Kd=5uM
    PDBbind: -logKd/Ki=5.30, Kd=5.0uM
    11156 1h6l:A (1.8) BS01 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    11157 1h6l:A (1.8) BS02 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    11158 1h6l:A (1.8) BS03 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    11159 1h6l:A (1.8) BS04 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    11160 1h6l:A (1.8) BS05 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    11161 1h6l:A (1.8) BS06 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    11162 1h6l:A (1.8) BS07 CA 3.1.3.8 GO:0005576 ... O66037 11566134
    11163 1h6l:A (1.8) BS08 PO4 3.1.3.8 GO:0005576 ... O66037 11566134
    11164 1h6l:A (1.8) BS09 PO4 3.1.3.8 GO:0005576 ... O66037 11566134
    11165 1h6m:A (1.64) BS01 G2F 3.2.1.17 GO:0003796 ... P00698 11518970
    11166 1h6n:A (2.11) BS01 HEM 1.11.1.6 GO:0004096 ... P42321 12486720
    11167 1h6n:A (2.11) BS02 ACT 1.11.1.6 GO:0004096 ... P42321 12486720
    11168 1h6v:A (3.0) BS01 FAD 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    11169 1h6v:A (3.0) BS02 NDP 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    11170 1h6v:B (3.0) BS01 FAD 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    11171 1h6v:B (3.0) BS02 NDP 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    11172 1h6v:C (3.0) BS01 FAD 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    11173 1h6v:C (3.0) BS02 NDP 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    11174 1h6v:D (3.0) BS01 FAD 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    11175 1h6v:D (3.0) BS02 NDP 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    11176 1h6v:E (3.0) BS01 FAD 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    11177 1h6v:E (3.0) BS02 NDP 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    11178 1h6v:F (3.0) BS01 FAD 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    11179 1h6v:F (3.0) BS02 NDP 1.11.1.2
    1.8.1.9
    GO:0001707 ... O89049 11481439
    11180 1h71:P (2.1) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    11181 1h71:P (2.1) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    11182 1h71:P (2.1) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    11183 1h71:P (2.1) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    11184 1h71:P (2.1) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    11185 1h71:P (2.1) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    11186 1h71:P (2.1) BS07 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    11187 1h71:P (2.1) BS08 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    11188 1h71:P (2.1) BS09 ZN 3.4.24.40 GO:0004222 ... O69771 12577270
    11189 1h72:C (1.8) BS01 HSE 2.7.1.39 GO:0004413 ... Q58504 11535056
    11190 1h72:C (1.8) BS02 ANP 2.7.1.39 GO:0004413 ... Q58504 11535056
    11191 1h73:A (2.0) BS01 THR 2.7.1.39 GO:0004413 ... Q58504 11535056
    11192 1h73:A (2.0) BS02 ANP 2.7.1.39 GO:0004413 ... Q58504 11535056
    11193 1h74:A (1.9) BS01 ILE 2.7.1.39 GO:0004413 ... Q58504 11535056
    11194 1h74:A (1.9) BS02 ADP 2.7.1.39 GO:0004413 ... Q58504 11535056
    11195 1h74:B (1.9) BS01 ILE 2.7.1.39 GO:0004413 ... Q58504 11535056
    11196 1h74:B (1.9) BS02 AGS 2.7.1.39 GO:0004413 ... Q58504 11535056
    11197 1h74:C (1.9) BS01 ILE 2.7.1.39 GO:0004413 ... Q58504 11535056
    11198 1h74:C (1.9) BS02 ADP 2.7.1.39 GO:0004413 ... Q58504 11535056
    11199 1h74:D (1.9) BS01 ILE 2.7.1.39 GO:0004413 ... Q58504 11535056
    11200 1h74:D (1.9) BS02 AGS 2.7.1.39 GO:0004413 ... Q58504 11535056

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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