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BioLiP
Download all results in tab-seperated text for 832530 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    17201 1h41:A (1.5) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    17202 1h41:A (1.5) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    17203 1h41:A (1.5) BS06 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    17204 1h41:B (1.5) BS01 GCV 3.2.1.131 GO:0004553 ... B3PC73 12654910
    17205 1h41:B (1.5) BS02 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    17206 1h41:B (1.5) BS03 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    17207 1h41:B (1.5) BS04 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    17208 1h41:B (1.5) BS05 CO 3.2.1.131 GO:0004553 ... B3PC73 12654910
    17209 1h42:A (2.15) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 14500716
    17210 1h43:A (2.2) BS01 CO3 3.4.21.- GO:0005576 ... P02788 12450380
    17211 1h43:A (2.2) BS02 FE 3.4.21.- GO:0005576 ... P02788 12450380
    17212 1h44:A (2.0) BS01 FE 3.4.21.- GO:0005576 ... P02788 12450380
    17213 1h44:A (2.0) BS02 CO3 3.4.21.- GO:0005576 ... P02788 12450380
    17214 1h45:A (1.95) BS01 FE 3.4.21.- GO:0005576 ... P02788 12450380
    17215 1h45:A (1.95) BS02 CO3 3.4.21.- GO:0005576 ... P02788 12450380
    17216 1h46:X (1.52) BS01 RNP 3.2.1.-
    3.2.1.4
    GO:0004553 ... Q7LHI2 12657782 MOAD: Ki=270uM
    PDBbind: -logKd/Ki=3.57, Ki=270uM
    17217 1h47:A (1.99) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    17218 1h47:A (1.99) BS02 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    17219 1h47:A (1.99) BS03 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17220 1h47:A (1.99) BS04 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17221 1h47:B (1.99) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    17222 1h47:B (1.99) BS02 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17223 1h47:B (1.99) BS03 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    17224 1h47:C (1.99) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    17225 1h47:C (1.99) BS02 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17226 1h47:C (1.99) BS03 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17227 1h47:C (1.99) BS04 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    17228 1h47:D (1.99) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    17229 1h47:D (1.99) BS02 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    17230 1h47:D (1.99) BS03 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17231 1h47:D (1.99) BS04 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17232 1h47:E (1.99) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    17233 1h47:E (1.99) BS02 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17234 1h47:E (1.99) BS03 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    17235 1h47:E (1.99) BS04 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17236 1h47:F (1.99) BS01 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    17237 1h47:F (1.99) BS02 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17238 1h47:F (1.99) BS03 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17239 1h47:F (1.99) BS04 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    17240 1h48:A (2.3) BS01 CDI 4.6.1.12 GO:0005515 ... P62617 15608374
    17241 1h48:A (2.3) BS02 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    17242 1h48:A (2.3) BS03 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17243 1h48:A (2.3) BS04 MN 4.6.1.12 GO:0005515 ... P62617 15608374
    17244 1h48:A (2.3) BS05 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17245 1h48:A (2.3) BS06 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    17246 1h48:B (2.3) BS01 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17247 1h48:B (2.3) BS02 CDI 4.6.1.12 GO:0005515 ... P62617 15608374
    17248 1h48:B (2.3) BS03 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    17249 1h48:B (2.3) BS04 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    17250 1h48:C (2.3) BS01 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17251 1h48:C (2.3) BS02 MN 4.6.1.12 GO:0005515 ... P62617 15608374
    17252 1h48:C (2.3) BS03 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17253 1h48:C (2.3) BS04 CDI 4.6.1.12 GO:0005515 ... P62617 15608374
    17254 1h48:C (2.3) BS05 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    17255 1h48:C (2.3) BS06 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    17256 1h48:D (2.3) BS01 CDI 4.6.1.12 GO:0005515 ... P62617 15608374
    17257 1h48:D (2.3) BS02 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    17258 1h48:D (2.3) BS03 MN 4.6.1.12 GO:0005515 ... P62617 15608374
    17259 1h48:D (2.3) BS04 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17260 1h48:D (2.3) BS05 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    17261 1h48:E (2.3) BS01 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17262 1h48:E (2.3) BS02 CDI 4.6.1.12 GO:0005515 ... P62617 15608374
    17263 1h48:E (2.3) BS03 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    17264 1h48:E (2.3) BS04 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    17265 1h48:E (2.3) BS05 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17266 1h48:F (2.3) BS01 CDI 4.6.1.12 GO:0005515 ... P62617 15608374
    17267 1h48:F (2.3) BS02 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17268 1h48:F (2.3) BS03 GPP 4.6.1.12 GO:0005515 ... P62617 15608374
    17269 1h48:F (2.3) BS04 C5P 4.6.1.12 GO:0005515 ... P62617 15608374
    17270 1h48:F (2.3) BS05 CDI 4.6.1.12 GO:0005515 ... P62617 15608374
    17271 1h48:F (2.3) BS06 ZN 4.6.1.12 GO:0005515 ... P62617 15608374
    17272 1h49:A (1.9) BS01 BGC 3.2.1.182
    3.2.1.21
    GO:0004553 ... P49235 12684498
    17273 1h49:B (1.9) BS01 HBO 3.2.1.182
    3.2.1.21
    GO:0004553 ... P49235 12684498
    17274 1h49:B (1.9) BS02 HBO 3.2.1.182
    3.2.1.21
    GO:0004553 ... P49235 12684498
    17275 1h49:B (1.9) BS03 BGC 3.2.1.182
    3.2.1.21
    GO:0004553 ... P49235 12684498
    17276 1h4b:A (-1.00) BS01 CA ? GO:0005509 ... Q39419 15037075
    17277 1h4b:A (-1.00) BS02 CA ? GO:0005509 ... Q39419 15037075
    17278 1h4g:A (1.1) BS01 X2F 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    17279 1h4g:A (1.1) BS02 XYP 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    17280 1h4g:B (1.1) BS01 X2F 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    17281 1h4g:B (1.1) BS02 XYP 3.2.1.8 GO:0004553 ... Q7SIE3 10381409
    17282 1h4h:A (1.9) BS01 XYS 3.2.1.8 GO:0004553 ... Q7SIE2 10381409
    17283 1h4h:A (1.9) BS02 XYP 3.2.1.8 GO:0004553 ... Q7SIE2 10381409
    17284 1h4h:B (1.9) BS01 XYS 3.2.1.8 GO:0004553 ... Q7SIE2 10381409
    17285 1h4h:B (1.9) BS02 XYP 3.2.1.8 GO:0004553 ... Q7SIE2 10381409
    17286 1h4h:C (1.9) BS01 XYS 3.2.1.8 GO:0004553 ... Q7SIE2 10381409
    17287 1h4h:C (1.9) BS02 XYP 3.2.1.8 GO:0004553 ... Q7SIE2 10381409
    17288 1h4h:D (1.9) BS01 XYS 3.2.1.8 GO:0004553 ... Q7SIE2 10381409
    17289 1h4h:D (1.9) BS02 XYP 3.2.1.8 GO:0004553 ... Q7SIE2 10381409
    17290 1h4i:A (1.94) BS01 PQQ 1.1.2.7 GO:0005509 ... P16027 7735834
    17291 1h4i:A (1.94) BS02 CA 1.1.2.7 GO:0005509 ... P16027 7735834
    17292 1h4i:C (1.94) BS01 PQQ 1.1.2.7 GO:0005509 ... P16027 7735834
    17293 1h4i:C (1.94) BS02 CA 1.1.2.7 GO:0005509 ... P16027 7735834
    17294 1h4j:A (3.0) BS01 PQQ 1.1.2.7 GO:0005509 ... P16027 11502173
    17295 1h4j:A (3.0) BS02 CA 1.1.2.7 GO:0005509 ... P16027 11502173
    17296 1h4j:C (3.0) BS01 PQQ 1.1.2.7 GO:0005509 ... P16027 11502173
    17297 1h4j:C (3.0) BS02 CA 1.1.2.7 GO:0005509 ... P16027 11502173
    17298 1h4j:E (3.0) BS01 PQQ 1.1.2.7 GO:0005509 ... P16027 11502173
    17299 1h4j:E (3.0) BS02 CA 1.1.2.7 GO:0005509 ... P16027 11502173
    17300 1h4j:G (3.0) BS01 PQQ 1.1.2.7 GO:0005509 ... P16027 11502173
    17301 1h4j:G (3.0) BS02 CA 1.1.2.7 GO:0005509 ... P16027 11502173
    17302 1h4k:X (2.05) BS01 PO2 2.8.1.1 GO:0004792 ... P52197 11592406
    17303 1h4n:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9398308
    17304 1h4p:A (1.75) BS01 BMA 3.2.1.58 GO:0000272 ... P23776 14730348
    17305 1h4p:A (1.75) BS02 BMA 3.2.1.58 GO:0000272 ... P23776 14730348
    17306 1h4q:A (3.0) BS01 rna 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17307 1h4q:A (3.0) BS02 ATP 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17308 1h4q:A (3.0) BS03 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17309 1h4q:A (3.0) BS04 PRI 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17310 1h4q:B (3.0) BS01 rna 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17311 1h4q:B (3.0) BS02 ATP 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17312 1h4q:B (3.0) BS03 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17313 1h4q:B (3.0) BS04 PRI 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17314 1h4s:A (2.85) BS01 rna 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17315 1h4s:A (2.85) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17316 1h4s:A (2.85) BS03 P5A 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17317 1h4s:B (2.85) BS01 rna 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17318 1h4s:B (2.85) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17319 1h4s:B (2.85) BS03 P5A 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17320 1h4t:A (2.9) BS01 PRO 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17321 1h4t:A (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17322 1h4t:B (2.9) BS01 PRO 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17323 1h4t:B (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17324 1h4t:C (2.9) BS01 PRO 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17325 1h4t:C (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17326 1h4t:D (2.9) BS01 PRO 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17327 1h4t:D (2.9) BS02 ZN 6.1.1.15 GO:0000166 ... Q5SM28 11399074
    17328 1h4w:A (1.7) BS01 BEN 3.4.21.4 GO:0004252 ... P35030 11827488 MOAD: Ki=22uM
    PDBbind: -logKd/Ki=4.66, Ki=22uM
    17329 1h4w:A (1.7) BS02 CA 3.4.21.4 GO:0004252 ... P35030 11827488
    17330 1h50:A (1.5) BS01 FMN ? GO:0000166 ... P71278 11428899
    17331 1h51:A (1.6) BS01 FMN ? GO:0000166 ... P71278 11428899
    17332 1h52:A (2.0) BS01 POP 3.1.27.- GO:0001525 ... P03950 11468363
    17333 1h53:A (2.0) BS01 PO4 3.1.27.- GO:0001525 ... P03950 11468363
    17334 1h54:B (2.15) BS01 PO4 2.4.1.8 GO:0003824 ... Q7SIE1 11587643
    17335 1h55:A (1.61) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17336 1h55:A (1.61) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17337 1h55:A (1.61) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17338 1h55:A (1.61) BS04 O 1.11.1.7 GO:0004601 ... P00433 12024218
    17339 1h56:A (3.0) BS01 MG 3.1.21.4 GO:0003677 ... P23657 12888347
    17340 1h56:B (3.0) BS01 MG 3.1.21.4 GO:0003677 ... P23657 12888347
    17341 1h57:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17342 1h57:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17343 1h57:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17344 1h57:A (1.6) BS04 OXY 1.11.1.7 GO:0004601 ... P00433 12024218
    17345 1h58:A (1.7) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17346 1h58:A (1.7) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17347 1h58:A (1.7) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17348 1h5a:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17349 1h5a:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17350 1h5a:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17351 1h5c:A (1.62) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17352 1h5c:A (1.62) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17353 1h5c:A (1.62) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17354 1h5d:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17355 1h5d:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17356 1h5d:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17357 1h5e:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17358 1h5e:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17359 1h5e:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17360 1h5f:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17361 1h5f:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17362 1h5f:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17363 1h5g:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17364 1h5g:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17365 1h5g:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17366 1h5h:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17367 1h5h:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17368 1h5h:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17369 1h5i:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17370 1h5i:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17371 1h5i:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17372 1h5j:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17373 1h5j:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17374 1h5j:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17375 1h5k:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17376 1h5k:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17377 1h5k:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17378 1h5l:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17379 1h5l:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17380 1h5l:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17381 1h5m:A (1.6) BS01 HEM 1.11.1.7 GO:0004601 ... P00433 12024218
    17382 1h5m:A (1.6) BS02 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17383 1h5m:A (1.6) BS03 CA 1.11.1.7 GO:0004601 ... P00433 12024218
    17384 1h5n:A (2.0) BS01 PGD 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 11502174
    17385 1h5n:A (2.0) BS02 PGD 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 11502174
    17386 1h5n:A (2.0) BS03 SO4 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 11502174
    17387 1h5n:C (2.0) BS01 PGD 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 11502174
    17388 1h5n:C (2.0) BS02 PGD 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 11502174
    17389 1h5n:C (2.0) BS03 SO4 1.7.2.3
    1.8.5.3
    GO:0016491 ... Q52675 11502174
    17390 1h5q:A (1.5) BS01 NAP 1.1.1.138 GO:0016491 ... O93868 11335726
    17391 1h5q:B (1.5) BS01 NAP 1.1.1.138 GO:0016491 ... O93868 11335726
    17392 1h5q:C (1.5) BS01 NAP 1.1.1.138 GO:0016491 ... O93868 11335726
    17393 1h5q:D (1.5) BS01 NAP 1.1.1.138 GO:0016491 ... O93868 11335726
    17394 1h5q:E (1.5) BS01 NAP 1.1.1.138 GO:0016491 ... O93868 11335726
    17395 1h5q:F (1.5) BS01 NAP 1.1.1.138 GO:0016491 ... O93868 11335726
    17396 1h5q:G (1.5) BS01 NAP 1.1.1.138 GO:0016491 ... O93868 11335726
    17397 1h5q:H (1.5) BS01 NAP 1.1.1.138 GO:0016491 ... O93868 11335726
    17398 1h5q:I (1.5) BS01 NAP 1.1.1.138 GO:0016491 ... O93868 11335726
    17399 1h5q:J (1.5) BS01 NAP 1.1.1.138 GO:0016491 ... O93868 11335726
    17400 1h5q:K (1.5) BS01 NAP 1.1.1.138 GO:0016491 ... O93868 11335726

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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